Variant report

Variant	rs17107420
Chromosome Location	chr14:38471513-38471514
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10498333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1113091	0.85[CHB][hapmap]
rs11844176	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11845696	0.86[CHB][hapmap]
rs11845813	1.00[EUR][1000 genomes]
rs11846034	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs11846599	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11848653	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11848963	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs11849824	0.86[CHB][hapmap]
rs11850193	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.93[ASN][1000 genomes]
rs17107371	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs17107373	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs17107427	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17107430	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1959674	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2022751	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs2211212	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2211213	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35490681	1.00[EUR][1000 genomes]
rs7142116	0.86[CHB][hapmap];0.87[AMR][1000 genomes]
rs7157423	0.82[AMR][1000 genomes]
rs7157647	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs7158399	0.85[CHB][hapmap];0.82[AMR][1000 genomes]
rs8015486	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs8015685	0.86[CHB][hapmap]
rs8015835	1.00[EUR][1000 genomes]
rs8016555	0.86[CHB][hapmap];1.00[EUR][1000 genomes]
rs8020636	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv901651	chr14:38419360-38556242	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38465000-38473000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:38465000-38473200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:38469200-38472200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr14:38470000-38471600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr14:38470600-38471600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:38470600-38473000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr14:38470800-38472400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:38470800-38473200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr14:38470800-38474000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr14:38471200-38473600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr14:38471400-38473800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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