Variant report

Variant	rs17107461
Chromosome Location	chr10:89729557-89729558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89724830..89727506-chr10:89728128..89730724,2	K562	blood:
2	chr10:89724975..89728613-chr10:89729224..89733070,3	K562	blood:
3	chr10:89721575..89723341-chr10:89728907..89731665,2	MCF-7	breast:
4	chr10:89727852..89730141-chr10:89733915..89736389,2	MCF-7	breast:
5	chr10:89729355..89732120-chr10:89734867..89736636,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10887764	1.00[ASN][1000 genomes]
rs11202609	0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12245922	1.00[ASN][1000 genomes]
rs17107001	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs35854253	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:89708800-89734400	Weak transcription	Aorta	Aorta
3	chr10:89712600-89731000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:89713000-89733200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:89713200-89729600	Weak transcription	Fetal Brain Male	brain
6	chr10:89714600-89738600	Weak transcription	NHEK	skin
7	chr10:89721600-89731800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:89721800-89735800	Weak transcription	A549	lung
9	chr10:89722000-89736000	Weak transcription	NHLF	lung
10	chr10:89724000-89733200	Weak transcription	HSMM	muscle
11	chr10:89724000-89739000	Weak transcription	Adipose Nuclei	Adipose
12	chr10:89724200-89729800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:89724200-89730600	Weak transcription	HSMMtube	muscle
14	chr10:89724200-89731200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:89724200-89738600	Weak transcription	HMEC	breast
16	chr10:89724200-89738800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:89724400-89733400	Weak transcription	Hela-S3	cervix
18	chr10:89724400-89738200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:89724400-89738600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:89724600-89732400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:89724600-89732400	Weak transcription	Ovary	ovary
22	chr10:89724800-89730000	Weak transcription	Left Ventricle	heart
23	chr10:89724800-89730400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:89724800-89730600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:89724800-89732400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:89724800-89732400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:89724800-89734600	Weak transcription	NH-A	brain
28	chr10:89724800-89734800	Weak transcription	Primary B cells from cord blood	blood
29	chr10:89724800-89736200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:89724800-89738400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:89724800-89739400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:89725000-89729600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:89725000-89732600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:89725000-89734600	Weak transcription	GM12878-XiMat	blood
35	chr10:89725800-89735600	Weak transcription	Liver	Liver
36	chr10:89726000-89735600	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr10:89726200-89732400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr10:89726400-89736200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:89726600-89732400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:89726600-89733600	Weak transcription	HUVEC	blood vessel
41	chr10:89726600-89734600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr10:89726600-89739400	Weak transcription	Fetal Thymus	thymus
43	chr10:89727000-89733000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:89727800-89729600	Enhancers	NHDF-Ad	bronchial
45	chr10:89727800-89734600	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr10:89728000-89730000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr10:89728600-89730200	Weak transcription	Fetal Lung	lung
48	chr10:89729000-89731400	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr10:89729000-89733000	Weak transcription	Osteobl	bone
50	chr10:89729000-89733600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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