The 2.0 version of rSNPBase

Variant report

Variant rs17110111
Chromosome Location chr1:94042207-94042208
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93995000-94045000 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:94020800-94050600 Weak transcription Fetal Thymus thymus
3 chr1:94022200-94044200 Weak transcription Small Intestine intestine
4 chr1:94024000-94044200 Strong transcription HSMM muscle
5 chr1:94025000-94043400 Strong transcription HUES6 Cell Line embryonic stem cell
6 chr1:94025200-94043000 Strong transcription Liver Liver
7 chr1:94025200-94043000 Strong transcription Rectal Mucosa Donor 29 rectum
8 chr1:94025400-94049400 Strong transcription Hela-S3 cervix
9 chr1:94025600-94043400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr1:94025600-94073800 Weak transcription Fetal Brain Female brain
11 chr1:94028000-94042600 Weak transcription Fetal Kidney kidney
12 chr1:94030200-94046400 Strong transcription Primary B cells from peripheral blood blood
13 chr1:94031200-94047800 Weak transcription GM12878-XiMat blood
14 chr1:94031800-94052400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr1:94032000-94053600 Weak transcription Primary hematopoietic stem cells blood
16 chr1:94032200-94045200 Weak transcription Primary hematopoietic stem cells short term culture blood
17 chr1:94033000-94050000 Genic enhancers Skeletal Muscle Male skeletal muscle
18 chr1:94033400-94043200 Strong transcription Aorta Aorta
19 chr1:94033400-94044800 Weak transcription Right Atrium heart
20 chr1:94033400-94045000 Strong transcription NHLF lung
21 chr1:94033400-94045000 Strong transcription Osteobl bone
22 chr1:94033600-94044000 Strong transcription Duodenum Mucosa Duodenum
23 chr1:94034000-94043800 Strong transcription Muscle Satellite Cultured Cells --
24 chr1:94034200-94042800 Strong transcription Fetal Adrenal Gland Adrenal Gland
25 chr1:94034800-94043000 Strong transcription Rectal Mucosa Donor 31 rectum
26 chr1:94035000-94044200 Strong transcription Stomach Smooth Muscle stomach
27 chr1:94035200-94044600 Strong transcription Lung lung
28 chr1:94035200-94045200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr1:94036000-94043000 Strong transcription A549 lung
30 chr1:94036200-94044800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr1:94036400-94048600 Weak transcription Colon Smooth Muscle Colon
32 chr1:94038000-94044000 Weak transcription Esophagus oesophagus
33 chr1:94038400-94043600 Strong transcription HUVEC blood vessel
34 chr1:94038400-94047800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
35 chr1:94038400-94054000 Weak transcription Brain Substantia Nigra brain
36 chr1:94038400-94054800 Weak transcription Brain Angular Gyrus brain
37 chr1:94038600-94051800 Weak transcription ES-I3 Cell Line embryonic stem cell
38 chr1:94038600-94054200 Weak transcription H9 Cell Line embryonic stem cell
39 chr1:94038800-94044000 Weak transcription Brain Hippocampus Middle brain
40 chr1:94039800-94043400 Strong transcription Fetal Intestine Small intestine
41 chr1:94040000-94042800 Strong transcription Sigmoid Colon Sigmoid Colon
42 chr1:94040000-94043400 Strong transcription Gastric stomach
43 chr1:94040000-94045600 Genic enhancers Fetal Muscle Leg muscle
44 chr1:94040000-94045800 Genic enhancers Fetal Muscle Trunk muscle
45 chr1:94040000-94055000 Genic enhancers Breast Myoepithelial Primary Cells Breast
46 chr1:94040200-94042800 Genic enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr1:94040200-94043000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
48 chr1:94040200-94043000 Strong transcription Colonic Mucosa Colon
49 chr1:94040200-94044800 Weak transcription Right Ventricle heart
50 chr1:94040400-94043000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015