Variant report
| Variant | rs17110608 |
|---|---|
| Chromosome Location | chr1:94386903-94386904 |
| allele | C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GCLM-1 | chr1:94386824-94387223 | NONHSAT004558 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:50)
| rs_ID | r2[population] |
|---|---|
| rs10874804 | 1.00[ASN][1000 genomes] |
| rs10874805 | 1.00[ASN][1000 genomes] |
| rs11165027 | 1.00[ASN][1000 genomes] |
| rs11165028 | 1.00[ASN][1000 genomes] |
| rs11165029 | 1.00[ASN][1000 genomes] |
| rs11165032 | 1.00[ASN][1000 genomes] |
| rs11805379 | 1.00[ASN][1000 genomes] |
| rs11808380 | 1.00[ASN][1000 genomes] |
| rs12059028 | 1.00[ASN][1000 genomes] |
| rs12062272 | 1.00[ASN][1000 genomes] |
| rs12062925 | 1.00[ASN][1000 genomes] |
| rs12069476 | 1.00[ASN][1000 genomes] |
| rs12076074 | 1.00[ASN][1000 genomes] |
| rs12078134 | 1.00[ASN][1000 genomes] |
| rs12080386 | 1.00[ASN][1000 genomes] |
| rs12081399 | 1.00[ASN][1000 genomes] |
| rs12090038 | 1.00[ASN][1000 genomes] |
| rs12090230 | 1.00[ASN][1000 genomes] |
| rs12094966 | 1.00[ASN][1000 genomes] |
| rs17110374 | 1.00[ASN][1000 genomes] |
| rs17110611 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2234729 | 1.00[ASN][1000 genomes] |
| rs4075342 | 1.00[ASN][1000 genomes] |
| rs41292667 | 1.00[ASN][1000 genomes] |
| rs41292669 | 1.00[ASN][1000 genomes] |
| rs41292671 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41292673 | 1.00[ASN][1000 genomes] |
| rs4542218 | 1.00[ASN][1000 genomes] |
| rs57136451 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58790885 | 1.00[ASN][1000 genomes] |
| rs59444123 | 1.00[ASN][1000 genomes] |
| rs59545065 | 1.00[ASN][1000 genomes] |
| rs61750895 | 1.00[ASN][1000 genomes] |
| rs6541397 | 1.00[ASN][1000 genomes] |
| rs6680755 | 1.00[ASN][1000 genomes] |
| rs6686765 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6692306 | 1.00[ASN][1000 genomes] |
| rs6701957 | 1.00[ASN][1000 genomes] |
| rs6702045 | 1.00[ASN][1000 genomes] |
| rs6702064 | 1.00[ASN][1000 genomes] |
| rs6704348 | 1.00[ASN][1000 genomes] |
| rs72965451 | 1.00[ASN][1000 genomes] |
| rs72967332 | 1.00[ASN][1000 genomes] |
| rs72967387 | 1.00[ASN][1000 genomes] |
| rs72969374 | 1.00[ASN][1000 genomes] |
| rs7514067 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7515991 | 1.00[ASN][1000 genomes] |
| rs7525516 | 1.00[ASN][1000 genomes] |
| rs7552401 | 1.00[ASN][1000 genomes] |
| rs7555872 | 1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:94375600-94421200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr1:94384000-94387000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 3 | chr1:94386000-94390600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
