Variant report
| Variant | rs17110613 |
|---|---|
| Chromosome Location | chr1:94387523-94387524 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:53)
| rs_ID | r2[population] |
|---|---|
| rs10489606 | 0.89[AMR][1000 genomes] |
| rs12065890 | 0.89[AMR][1000 genomes] |
| rs12068954 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12078344 | 0.89[AMR][1000 genomes] |
| rs17878538 | 0.89[AMR][1000 genomes] |
| rs2221923 | 1.00[EUR][1000 genomes] |
| rs35650636 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56324350 | 0.89[AMR][1000 genomes] |
| rs58126899 | 1.00[EUR][1000 genomes] |
| rs58750328 | 1.00[EUR][1000 genomes] |
| rs59101071 | 0.89[AMR][1000 genomes] |
| rs59493724 | 1.00[EUR][1000 genomes] |
| rs59653321 | 1.00[EUR][1000 genomes] |
| rs60179644 | 1.00[EUR][1000 genomes] |
| rs60188127 | 1.00[EUR][1000 genomes] |
| rs60226009 | 1.00[EUR][1000 genomes] |
| rs60680584 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61564641 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6541391 | 1.00[EUR][1000 genomes] |
| rs6541392 | 1.00[EUR][1000 genomes] |
| rs6541407 | 1.00[EUR][1000 genomes] |
| rs6661879 | 1.00[EUR][1000 genomes] |
| rs6671646 | 1.00[EUR][1000 genomes] |
| rs6675622 | 1.00[EUR][1000 genomes] |
| rs6677068 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6686775 | 1.00[EUR][1000 genomes] |
| rs6696070 | 1.00[EUR][1000 genomes] |
| rs6703195 | 1.00[EUR][1000 genomes] |
| rs72967379 | 1.00[EUR][1000 genomes] |
| rs72971232 | 1.00[EUR][1000 genomes] |
| rs72971262 | 1.00[EUR][1000 genomes] |
| rs72971265 | 1.00[EUR][1000 genomes] |
| rs72971278 | 1.00[EUR][1000 genomes] |
| rs72971281 | 1.00[EUR][1000 genomes] |
| rs72971288 | 1.00[EUR][1000 genomes] |
| rs72972706 | 1.00[EUR][1000 genomes] |
| rs72972731 | 1.00[EUR][1000 genomes] |
| rs72972736 | 1.00[EUR][1000 genomes] |
| rs72972747 | 1.00[EUR][1000 genomes] |
| rs72972748 | 1.00[EUR][1000 genomes] |
| rs7521107 | 1.00[EUR][1000 genomes] |
| rs7525976 | 1.00[EUR][1000 genomes] |
| rs7526263 | 1.00[EUR][1000 genomes] |
| rs7530436 | 1.00[EUR][1000 genomes] |
| rs7530531 | 1.00[EUR][1000 genomes] |
| rs7537686 | 1.00[EUR][1000 genomes] |
| rs7541690 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7542402 | 1.00[EUR][1000 genomes] |
| rs7542625 | 1.00[EUR][1000 genomes] |
| rs7543184 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7544121 | 0.81[AFR][1000 genomes] |
| rs7548581 | 0.90[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs871855 | 1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:94375600-94421200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr1:94386000-94390600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
