Variant report

Variant	rs17110883
Chromosome Location	chr1:94492972-94492973
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17110887	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17110894	0.94[YRI][hapmap]
rs17110898	0.91[AFR][1000 genomes]
rs60759501	0.91[AFR][1000 genomes]
rs74102081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94488000-94496600	Weak transcription	Lung	lung
2	chr1:94488200-94505000	Weak transcription	Spleen	Spleen
3	chr1:94488400-94493400	Weak transcription	Placenta	Placenta
4	chr1:94488600-94502600	Weak transcription	Right Atrium	heart
5	chr1:94489200-94493800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:94490800-94494200	Enhancers	HMEC	breast
7	chr1:94491200-94494200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:94491400-94494000	Enhancers	NHEK	skin
9	chr1:94491400-94499000	Enhancers	HepG2	liver
10	chr1:94491600-94494400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:94491600-94496600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:94491800-94496600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:94492000-94493200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:94492000-94496400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:94492200-94496000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:94492200-94497200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:94492200-94510000	Weak transcription	Aorta	Aorta
18	chr1:94492800-94493000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:94492800-94498600	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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