Variant report

Variant	rs17112860
Chromosome Location	chr5:151568426-151568427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10043946	1.00[EUR][1000 genomes]
rs10055017	1.00[EUR][1000 genomes]
rs10064138	1.00[EUR][1000 genomes]
rs10068083	1.00[EUR][1000 genomes]
rs10069511	1.00[EUR][1000 genomes]
rs1035960	1.00[EUR][1000 genomes]
rs13356053	1.00[EUR][1000 genomes]
rs13356620	1.00[EUR][1000 genomes]
rs1422927	1.00[EUR][1000 genomes]
rs17112916	1.00[EUR][1000 genomes]
rs17112920	1.00[EUR][1000 genomes]
rs17112975	1.00[EUR][1000 genomes]
rs1833760	1.00[EUR][1000 genomes]
rs1946487	1.00[EUR][1000 genomes]
rs2034583	1.00[EUR][1000 genomes]
rs28478867	1.00[EUR][1000 genomes]
rs28649615	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv5073	chr5:151551846-151597040	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151565600-151572600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:151565600-151577800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:151567600-151568600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:151567600-151568600	Enhancers	Ovary	ovary
5	chr5:151567600-151569000	Enhancers	Adipose Nuclei	Adipose
6	chr5:151568400-151571600	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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