Variant report
| Variant | rs17112920 |
|---|---|
| Chromosome Location | chr5:151621191-151621192 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10043946 | 1.00[EUR][1000 genomes] |
| rs10055017 | 1.00[EUR][1000 genomes] |
| rs10055652 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10064138 | 1.00[EUR][1000 genomes] |
| rs10068083 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10069511 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10077195 | 0.87[AMR][1000 genomes] |
| rs1035960 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10515650 | 0.89[AMR][1000 genomes] |
| rs13356053 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13356620 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13358035 | 0.87[AMR][1000 genomes] |
| rs1422927 | 1.00[EUR][1000 genomes] |
| rs17112860 | 1.00[EUR][1000 genomes] |
| rs17112916 | 1.00[EUR][1000 genomes] |
| rs17112975 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17112976 | 0.91[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs1833760 | 1.00[EUR][1000 genomes] |
| rs1946487 | 1.00[EUR][1000 genomes] |
| rs2034583 | 1.00[EUR][1000 genomes] |
| rs28478867 | 1.00[EUR][1000 genomes] |
| rs28649615 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023828 | chr5:151522149-151956217 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv830519 | chr5:151588627-151800192 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:151621000-151621200 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
