Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11804137	1.00[MEX][hapmap]
rs12077497	1.00[MEX][hapmap]
rs1524718	1.00[MEX][hapmap]
rs17115931	1.00[MEX][hapmap]
rs17115957	1.00[MEX][hapmap]
rs17115987	1.00[MEX][hapmap]
rs17115991	1.00[MEX][hapmap]
rs17116108	1.00[AMR][1000 genomes]
rs17116114	1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs17116118	1.00[AMR][1000 genomes]
rs17116122	1.00[AMR][1000 genomes]
rs17116136	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17116283	1.00[MEX][hapmap]
rs2691447	1.00[MEX][hapmap]
rs2805850	1.00[MEX][hapmap]
rs4409680	1.00[AFR][1000 genomes]
rs4636488	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs56323134	1.00[AFR][1000 genomes]
rs60982032	0.90[AFR][1000 genomes]
rs6670299	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6704346	1.00[MEX][hapmap]
rs74075803	1.00[AFR][1000 genomes]
rs74075813	0.96[AFR][1000 genomes]
rs74075814	0.96[AFR][1000 genomes]
rs74075822	0.84[AFR][1000 genomes]
rs74077733	1.00[AMR][1000 genomes]
rs74077735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7540673	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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