Variant report

Variant	rs1711903
Chromosome Location	chr6:64079729-64079730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64078716..64081417-chr6:64082620..64086041,3	MCF-7	breast:
2	chr6:64079102..64081894-chr6:64099823..64102338,2	K562	blood:

Variant related genes	Relation type
ENSG00000218617	Chromatin interaction

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs1010057	0.95[EUR][1000 genomes]
rs1320419	0.95[EUR][1000 genomes]
rs1404779	0.95[EUR][1000 genomes]
rs1464865	0.95[EUR][1000 genomes]
rs1464866	0.90[EUR][1000 genomes]
rs1525354	0.95[EUR][1000 genomes]
rs1525355	0.95[EUR][1000 genomes]
rs1525357	0.95[EUR][1000 genomes]
rs1608812	0.89[EUR][1000 genomes]
rs1619321	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1621804	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1625205	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1628449	0.90[EUR][1000 genomes]
rs1631333	0.89[EUR][1000 genomes]
rs1711897	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711898	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711899	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711900	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711901	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711902	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711904	0.95[EUR][1000 genomes]
rs1711906	0.95[EUR][1000 genomes]
rs1711912	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1711913	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1711914	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1711915	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1711918	0.95[EUR][1000 genomes]
rs1711919	0.89[EUR][1000 genomes]
rs1711927	0.95[EUR][1000 genomes]
rs1711928	0.95[EUR][1000 genomes]
rs1723497	0.95[EUR][1000 genomes]
rs1723498	0.95[EUR][1000 genomes]
rs1723499	0.95[EUR][1000 genomes]
rs1723500	0.95[EUR][1000 genomes]
rs1723502	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1723503	0.95[EUR][1000 genomes]
rs1723504	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1723506	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1723507	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1723508	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1723528	0.86[EUR][1000 genomes]
rs1723531	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1741780	0.95[EUR][1000 genomes]
rs1741782	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1741783	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1741784	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1741786	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1741787	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1741788	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1741789	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1741790	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1741799	0.90[EUR][1000 genomes]
rs1741802	0.89[EUR][1000 genomes]
rs1741805	0.95[EUR][1000 genomes]
rs1741810	0.95[EUR][1000 genomes]
rs1741813	0.95[EUR][1000 genomes]
rs1779745	0.89[EUR][1000 genomes]
rs1779749	0.84[EUR][1000 genomes]
rs1779753	0.95[EUR][1000 genomes]
rs1779755	0.95[EUR][1000 genomes]
rs1779756	0.95[EUR][1000 genomes]
rs1779757	0.95[EUR][1000 genomes]
rs1779758	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779760	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1857565	0.89[EUR][1000 genomes]
rs1936532	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005098	0.95[EUR][1000 genomes]
rs2474908	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2622306	0.89[EUR][1000 genomes]
rs2622308	0.89[EUR][1000 genomes]
rs2677021	0.90[EUR][1000 genomes]
rs2677022	0.95[EUR][1000 genomes]
rs2677023	0.95[EUR][1000 genomes]
rs2677024	0.86[EUR][1000 genomes]
rs2677026	0.95[EUR][1000 genomes]
rs2677027	0.95[EUR][1000 genomes]
rs2677028	0.95[EUR][1000 genomes]
rs2677029	0.95[EUR][1000 genomes]
rs2753064	0.89[EUR][1000 genomes]
rs2753065	0.89[EUR][1000 genomes]
rs2753069	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2753070	0.95[EUR][1000 genomes]
rs2753071	0.95[EUR][1000 genomes]
rs2753072	0.95[EUR][1000 genomes]
rs2753073	0.95[EUR][1000 genomes]
rs2753074	0.95[EUR][1000 genomes]
rs2800019	0.85[EUR][1000 genomes]
rs2800020	0.89[EUR][1000 genomes]
rs2800021	0.89[EUR][1000 genomes]
rs2800024	0.89[EUR][1000 genomes]
rs2800025	0.89[EUR][1000 genomes]
rs2800029	0.89[EUR][1000 genomes]
rs2800031	0.95[EUR][1000 genomes]
rs2800034	0.95[EUR][1000 genomes]
rs2800035	0.95[EUR][1000 genomes]
rs2800036	0.95[EUR][1000 genomes]
rs4710426	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs482904	0.95[ASN][1000 genomes]
rs59943612	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60505637	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61229307	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6454169	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6933112	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs732948	0.95[EUR][1000 genomes]
rs7381742	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7382020	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7750785	0.95[EUR][1000 genomes]
rs7752941	0.95[EUR][1000 genomes]
rs7757686	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7758841	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7761720	0.84[EUR][1000 genomes]
rs7771677	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7771703	0.95[EUR][1000 genomes]
rs824372	0.83[ASN][1000 genomes]
rs824373	0.95[EUR][1000 genomes]
rs824374	0.95[EUR][1000 genomes]
rs824375	0.95[EUR][1000 genomes]
rs824376	0.95[EUR][1000 genomes]
rs824377	0.95[EUR][1000 genomes]
rs824378	0.95[EUR][1000 genomes]
rs824379	0.95[EUR][1000 genomes]
rs824380	0.95[EUR][1000 genomes]
rs824381	0.95[EUR][1000 genomes]
rs824383	0.95[EUR][1000 genomes]
rs824385	0.95[EUR][1000 genomes]
rs824387	0.95[EUR][1000 genomes]
rs824388	0.89[EUR][1000 genomes]
rs824390	0.95[EUR][1000 genomes]
rs824391	0.95[EUR][1000 genomes]
rs824392	0.95[EUR][1000 genomes]
rs824393	0.95[EUR][1000 genomes]
rs824394	0.95[EUR][1000 genomes]
rs860349	0.95[EUR][1000 genomes]
rs861113	0.95[EUR][1000 genomes]
rs865415	0.95[EUR][1000 genomes]
rs865416	0.95[EUR][1000 genomes]
rs940741	0.95[EUR][1000 genomes]
rs9767041	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1031548	chr6:64026862-64102045	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030651	chr6:64028392-64102045	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64072600-64081400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:64076400-64113600	Weak transcription	Placenta	Placenta
3	chr6:64078200-64080200	Strong transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links