Variant report
| Variant | rs1711917 |
|---|---|
| Chromosome Location | chr6:64029649-64029650 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:64028950..64031387-chr6:64282272..64283955,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000266680 | Chromatin interaction |
| ENSG00000112245 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs12111218 | 0.82[MKK][hapmap] |
| rs1616719 | 0.92[AFR][1000 genomes] |
| rs1711894 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1723515 | 1.00[AMR][1000 genomes] |
| rs1723520 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1723521 | 1.00[MEX][hapmap] |
| rs1723522 | 1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1723524 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1723525 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1723534 | 1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1741781 | 0.90[AFR][1000 genomes] |
| rs1741793 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1741812 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1878460 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2800014 | 1.00[MEX][hapmap] |
| rs7776434 | 0.82[MKK][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019831 | chr6:63279677-64230736 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1025099 | chr6:63514227-64055649 | Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv538270 | chr6:63682752-64147241 | Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv1031548 | chr6:64026862-64102045 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv1030651 | chr6:64028392-64102045 | Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:64018200-64050800 | Weak transcription | A549 | lung |
| 2 | chr6:64028600-64029800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
