Variant report
| Variant | rs17121075 |
|---|---|
| Chromosome Location | chr14:85856796-85856797 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12433169 | 0.81[EUR][1000 genomes] |
| rs12433201 | 0.88[EUR][1000 genomes] |
| rs12433662 | 0.83[EUR][1000 genomes] |
| rs12433731 | 0.83[EUR][1000 genomes] |
| rs12433738 | 0.83[EUR][1000 genomes] |
| rs12435851 | 0.88[EUR][1000 genomes] |
| rs12587677 | 0.83[EUR][1000 genomes] |
| rs12589346 | 0.85[EUR][1000 genomes] |
| rs17201995 | 0.83[EUR][1000 genomes] |
| rs17796849 | 0.81[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes] |
| rs1952252 | 0.83[EUR][1000 genomes] |
| rs1952253 | 0.81[EUR][1000 genomes] |
| rs2034018 | 0.82[EUR][1000 genomes] |
| rs3736817 | 0.85[EUR][1000 genomes] |
| rs3736818 | 0.87[EUR][1000 genomes] |
| rs59177285 | 0.80[EUR][1000 genomes] |
| rs59690397 | 0.90[EUR][1000 genomes] |
| rs61980086 | 0.83[EUR][1000 genomes] |
| rs61980106 | 0.88[EUR][1000 genomes] |
| rs61980107 | 0.88[EUR][1000 genomes] |
| rs7143281 | 0.83[EUR][1000 genomes] |
| rs7155661 | 0.83[EUR][1000 genomes] |
| rs72691207 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047924 | chr14:85826280-85868228 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1035826 | chr14:85850141-85898732 | Flanking Active TSS Enhancers Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1041194 | chr14:85853080-85896552 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv456357 | chr14:85855155-85896161 | Weak transcription Enhancers Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv565427 | chr14:85855155-85896161 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:85856000-85858200 | Enhancers | Fetal Lung | lung |
