Variant report

Variant	rs17124672
Chromosome Location	chr12:50815498-50815499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:50797471..50799671-chr12:50813461..50817013,3	K562	blood:
2	chr12:50794494..50797062-chr12:50813268..50815522,2	MCF-7	breast:
3	chr12:50805941..50808167-chr12:50815030..50816604,2	K562	blood:

Variant related genes	Relation type
ENSG00000161813	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10506293	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10747580	0.93[ASN][1000 genomes]
rs10747581	0.93[ASN][1000 genomes]
rs10783362	0.86[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs10783368	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10876030	0.85[ASN][1000 genomes]
rs10876034	0.86[ASN][1000 genomes]
rs10876048	0.85[EUR][1000 genomes]
rs10876054	0.85[EUR][1000 genomes]
rs11169408	0.85[ASN][1000 genomes]
rs11169422	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11169427	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11169440	0.86[ASN][1000 genomes]
rs12099511	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12099615	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12296379	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12307602	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12320201	0.85[EUR][1000 genomes]
rs12578525	0.88[ASN][1000 genomes]
rs13328926	0.90[EUR][1000 genomes]
rs1402693	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1521517	0.85[EUR][1000 genomes]
rs17119774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17119778	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs17531020	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996750	0.90[EUR][1000 genomes]
rs2252595	0.81[EUR][1000 genomes]
rs2684902	0.85[EUR][1000 genomes]
rs2684906	0.85[EUR][1000 genomes]
rs28414775	0.90[EUR][1000 genomes]
rs28479152	0.90[EUR][1000 genomes]
rs2947617	0.85[EUR][1000 genomes]
rs4129355	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4238104	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs4257057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4298982	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs4306347	0.90[EUR][1000 genomes]
rs4351895	0.91[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs4450234	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4517607	0.90[EUR][1000 genomes]
rs4562889	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4768877	0.92[ASN][1000 genomes]
rs4768878	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs4768879	0.88[ASN][1000 genomes]
rs4768880	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4768887	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4768928	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4768936	0.93[ASN][1000 genomes]
rs56671180	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56753963	0.90[EUR][1000 genomes]
rs56989201	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57283487	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57293958	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57512759	0.90[EUR][1000 genomes]
rs57578212	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57811009	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57828015	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58500867	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58869591	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58888905	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58915267	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58916974	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58943330	0.90[EUR][1000 genomes]
rs59163743	0.81[AMR][1000 genomes]
rs59194948	0.90[EUR][1000 genomes]
rs59683461	0.90[EUR][1000 genomes]
rs59696942	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59968707	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60010359	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60198651	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60201334	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60239257	0.90[EUR][1000 genomes]
rs60242613	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60396677	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60420087	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60494920	0.90[EUR][1000 genomes]
rs60610745	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60743903	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60908906	0.90[EUR][1000 genomes]
rs61578731	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6580753	0.88[ASN][1000 genomes]
rs6580754	0.87[ASN][1000 genomes]
rs7131993	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7133488	0.96[ASN][1000 genomes]
rs7135159	0.92[ASN][1000 genomes]
rs7135222	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7138063	0.86[ASN][1000 genomes]
rs7295610	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7296212	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs7299321	0.96[ASN][1000 genomes]
rs7301125	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7302749	0.85[EUR][1000 genomes]
rs7304017	0.86[ASN][1000 genomes]
rs7304262	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7306387	0.90[EUR][1000 genomes]
rs7310507	0.90[EUR][1000 genomes]
rs74090120	0.83[AMR][1000 genomes]
rs7487645	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7953880	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7955176	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7955310	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7957033	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs7965165	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7974480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7978443	0.90[EUR][1000 genomes]
rs7978625	0.91[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs7979184	0.84[EUR][1000 genomes]
rs951591	0.90[EUR][1000 genomes]
rs9634264	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899075	chr12:50594947-50835060	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
2	esv2761738	chr12:50627292-50836427	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv1054480	chr12:50691039-50859665	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1041563	chr12:50705715-50861699	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv1049665	chr12:50705715-50871542	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv899076	chr12:50770291-50869589	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
7	nsv469376	chr12:50792846-50856613	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
8	nsv558841	chr12:50792846-50856613	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
9	nsv470291	chr12:50792846-50858820	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50795400-50819400	Weak transcription	Spleen	Spleen
2	chr12:50796000-50819400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:50796800-50823200	Weak transcription	HSMMtube	muscle
4	chr12:50796800-50824000	Weak transcription	Fetal Brain Female	brain
5	chr12:50796800-50832600	Weak transcription	Brain Substantia Nigra	brain
6	chr12:50797000-50821800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr12:50797000-50822200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr12:50797000-50822600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr12:50797200-50823800	Weak transcription	NH-A	brain
10	chr12:50797600-50815600	Weak transcription	Brain Germinal Matrix	brain
11	chr12:50797600-50822800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr12:50797600-50826200	Weak transcription	NHDF-Ad	bronchial
13	chr12:50797600-50826800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr12:50797600-50829600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr12:50798200-50819400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr12:50798400-50822400	Weak transcription	Colon Smooth Muscle	Colon
17	chr12:50798400-50824000	Weak transcription	Fetal Kidney	kidney
18	chr12:50799000-50818800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr12:50803200-50823200	Weak transcription	Small Intestine	intestine
20	chr12:50805800-50818600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr12:50806400-50819200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr12:50807200-50819400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:50807200-50824000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr12:50807400-50822600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr12:50808200-50824000	Weak transcription	Brain Angular Gyrus	brain
26	chr12:50808400-50818800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr12:50808600-50819000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr12:50809600-50872200	Weak transcription	Fetal Brain Male	brain
29	chr12:50810000-50819400	Weak transcription	Right Ventricle	heart
30	chr12:50810200-50818800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr12:50810400-50818600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr12:50810400-50819400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr12:50810400-50821600	Weak transcription	Dnd41	blood
34	chr12:50810400-50821800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr12:50810400-50822400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr12:50810600-50818800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr12:50810600-50819000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr12:50810600-50819200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr12:50810600-50819400	Weak transcription	Brain Anterior Caudate	brain
40	chr12:50810600-50819400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr12:50810600-50821600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr12:50810600-50823400	Weak transcription	Ovary	ovary
43	chr12:50810600-50823600	Weak transcription	HepG2	liver
44	chr12:50810600-50824000	Weak transcription	Gastric	stomach
45	chr12:50810600-50824200	Weak transcription	Colonic Mucosa	Colon
46	chr12:50810600-50824400	Weak transcription	NHLF	lung
47	chr12:50810600-50856600	Weak transcription	Aorta	Aorta
48	chr12:50810800-50818600	Weak transcription	HUVEC	blood vessel
49	chr12:50810800-50819000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr12:50810800-50819000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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