Variant report

Variant	rs17124888
Chromosome Location	chr12:51083711-51083712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51080928..51083785-chr12:51087182..51088712,2	MCF-7	breast:
2	chr12:51083328..51084932-chr12:51085499..51087638,2	K562	blood:
3	chr12:51082917..51085184-chr12:51092680..51094317,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10506296	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.88[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10783368	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs10783390	1.00[CEU][hapmap]
rs10876048	0.86[EUR][1000 genomes]
rs10876054	0.86[EUR][1000 genomes]
rs10876082	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs10876083	0.95[EUR][1000 genomes]
rs10876085	0.87[EUR][1000 genomes]
rs10876088	0.95[EUR][1000 genomes]
rs10876091	0.87[EUR][1000 genomes]
rs11169551	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11169553	0.95[EUR][1000 genomes]
rs11169556	0.87[EUR][1000 genomes]
rs12099615	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12296379	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12320201	0.86[EUR][1000 genomes]
rs13328926	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1402693	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1521515	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1521517	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17124907	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1815010	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1996750	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2246840	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2252595	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2684886	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2684890	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2684891	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2684902	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2684906	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2700486	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28414775	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28479152	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2947617	0.86[EUR][1000 genomes]
rs3803181	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3825401	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4129355	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs4132432	0.95[MEX][hapmap];0.86[AMR][1000 genomes]
rs4143663	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4306347	0.90[EUR][1000 genomes]
rs4517607	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4562889	1.00[CEU][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4768887	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs4768909	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4768915	0.83[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4768920	0.95[EUR][1000 genomes]
rs56753963	0.90[EUR][1000 genomes]
rs56818625	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57328764	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57512759	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58301497	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58943330	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59194948	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59284993	1.00[EUR][1000 genomes]
rs59683461	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60239257	0.90[EUR][1000 genomes]
rs60494920	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60908906	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6580766	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6580767	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs6580768	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs6580770	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7131993	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs7132443	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7135222	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs7301125	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs7302749	0.86[EUR][1000 genomes]
rs7303202	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7304793	0.86[EUR][1000 genomes]
rs7306387	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7310507	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7487645	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7953880	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7955310	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs7959129	1.00[CEU][hapmap]
rs7969251	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7978443	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7979184	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7979474	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs829125	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs865490	0.90[EUR][1000 genomes]
rs939631	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs951591	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9634264	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51028400-51092400	Weak transcription	Gastric	stomach
2	chr12:51041800-51091400	Weak transcription	Pancreas	Pancrea
3	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:51053000-51086200	Weak transcription	Psoas Muscle	Psoas
5	chr12:51053200-51092400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:51053800-51089200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:51057000-51089600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:51058600-51089000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:51059400-51089600	Weak transcription	Small Intestine	intestine
10	chr12:51060000-51101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
12	chr12:51062600-51091800	Strong transcription	Liver	Liver
13	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr12:51063800-51085600	Strong transcription	Primary T cells from cord blood	blood
17	chr12:51064000-51109800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr12:51064800-51090000	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr12:51064800-51095800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr12:51067200-51084600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr12:51067200-51085400	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr12:51067400-51085400	Strong transcription	Primary B cells from cord blood	blood
24	chr12:51067400-51106200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr12:51068200-51095200	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr12:51068200-51106200	Strong transcription	Fetal Thymus	thymus
30	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
31	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr12:51068400-51095000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr12:51071000-51089400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr12:51071400-51083800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr12:51072000-51083800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr12:51072000-51089000	Weak transcription	NHDF-Ad	bronchial
37	chr12:51072200-51089200	Weak transcription	Fetal Brain Male	brain
38	chr12:51072600-51084400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr12:51073000-51090600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr12:51074200-51084800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr12:51074200-51087800	Strong transcription	Fetal Intestine Large	intestine
42	chr12:51074200-51106000	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr12:51074600-51109800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr12:51074800-51083800	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr12:51075000-51083800	Strong transcription	Brain Anterior Caudate	brain
47	chr12:51075200-51098800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr12:51075800-51083800	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr12:51076400-51085400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr12:51076600-51102600	Strong transcription	Adipose Nuclei	Adipose

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