Variant report

Variant	rs17128635
Chromosome Location	chr14:56092810-56092811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56090621..56092571-chr14:56092593..56095117,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10129990	1.00[EUR][1000 genomes]
rs10132721	1.00[EUR][1000 genomes]
rs10151466	1.00[EUR][1000 genomes]
rs10151733	1.00[EUR][1000 genomes]
rs17128493	1.00[EUR][1000 genomes]
rs17128496	1.00[EUR][1000 genomes]
rs17128594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128600	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128634	1.00[EUR][1000 genomes]
rs17128636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128671	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128672	1.00[EUR][1000 genomes]
rs60318423	1.00[EUR][1000 genomes]
rs7142744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73285833	1.00[EUR][1000 genomes]
rs73287725	1.00[AMR][1000 genomes]
rs8008958	1.00[EUR][1000 genomes]
rs8011213	1.00[EUR][1000 genomes]
rs8015485	1.00[EUR][1000 genomes]
rs8023112	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9743909	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901961	chr14:55853724-56101879	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv901962	chr14:55862956-56101879	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv901964	chr14:55871452-56101879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv1051564	chr14:55895610-56130788	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv542103	chr14:55895610-56130788	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv901965	chr14:55976428-56101879	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56078600-56148600	Weak transcription	Stomach Mucosa	stomach
2	chr14:56078800-56095400	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:56079200-56095200	Strong transcription	Primary T cells from cord blood	blood
4	chr14:56079800-56111400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr14:56080200-56097800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr14:56080800-56110800	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr14:56086000-56093400	Strong transcription	A549	lung
8	chr14:56086800-56094400	Weak transcription	NHDF-Ad	bronchial
9	chr14:56087400-56093400	Weak transcription	K562	blood
10	chr14:56087400-56094400	Weak transcription	HepG2	liver
11	chr14:56087400-56094800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:56087400-56111800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr14:56087400-56112200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:56087400-56132200	Strong transcription	Dnd41	blood
15	chr14:56087600-56099000	Strong transcription	Primary B cells from peripheral blood	blood
16	chr14:56087600-56099400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr14:56087600-56100400	Weak transcription	Right Ventricle	heart
18	chr14:56087600-56100600	Weak transcription	Fetal Intestine Small	intestine
19	chr14:56087600-56101400	Weak transcription	Pancreas	Pancrea
20	chr14:56087600-56107400	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr14:56087600-56110000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:56087600-56145200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:56087800-56093800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr14:56088000-56093600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr14:56088000-56094400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr14:56088000-56095400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:56088000-56096800	Weak transcription	Small Intestine	intestine
28	chr14:56088000-56096800	Weak transcription	NHLF	lung
29	chr14:56088000-56101200	Weak transcription	Esophagus	oesophagus
30	chr14:56088000-56101600	Weak transcription	Fetal Brain Male	brain
31	chr14:56088000-56103600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr14:56088200-56093400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr14:56088200-56094200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr14:56088200-56094400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr14:56088200-56094400	Weak transcription	Fetal Kidney	kidney
36	chr14:56088200-56096400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr14:56088200-56098600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr14:56088200-56104000	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr14:56088200-56108600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr14:56088200-56129400	Weak transcription	Spleen	Spleen
41	chr14:56088200-56132200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:56088400-56093000	Weak transcription	Brain Substantia Nigra	brain
43	chr14:56088400-56094200	Weak transcription	Duodenum Mucosa	Duodenum
44	chr14:56088400-56094400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr14:56088400-56094400	Weak transcription	Fetal Lung	lung
46	chr14:56088400-56094400	Weak transcription	Thymus	Thymus
47	chr14:56088400-56094600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr14:56088400-56096800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr14:56088400-56103600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr14:56088400-56121600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links