Variant report

Variant	rs17128636
Chromosome Location	chr14:56094726-56094727
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:56090621..56092571-chr14:56092593..56095117,2	K562	blood:
2	chr14:56093158..56095942-chr14:56099777..56101884,2	MCF-7	breast:
3	chr14:56089891..56092554-chr14:56094348..56096423,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10129990	1.00[EUR][1000 genomes]
rs10132721	1.00[EUR][1000 genomes]
rs10151466	1.00[EUR][1000 genomes]
rs10151733	1.00[EUR][1000 genomes]
rs17128493	1.00[EUR][1000 genomes]
rs17128496	1.00[EUR][1000 genomes]
rs17128594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128600	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128634	1.00[EUR][1000 genomes]
rs17128635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128671	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128672	1.00[EUR][1000 genomes]
rs60318423	1.00[EUR][1000 genomes]
rs7142744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73285833	1.00[EUR][1000 genomes]
rs73287725	1.00[AMR][1000 genomes]
rs8008958	1.00[EUR][1000 genomes]
rs8011213	1.00[EUR][1000 genomes]
rs8015485	1.00[EUR][1000 genomes]
rs8023112	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9743909	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901961	chr14:55853724-56101879	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv901962	chr14:55862956-56101879	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv901964	chr14:55871452-56101879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv1051564	chr14:55895610-56130788	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv542103	chr14:55895610-56130788	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv901965	chr14:55976428-56101879	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56078600-56148600	Weak transcription	Stomach Mucosa	stomach
2	chr14:56078800-56095400	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:56079200-56095200	Strong transcription	Primary T cells from cord blood	blood
4	chr14:56079800-56111400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr14:56080200-56097800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr14:56080800-56110800	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr14:56087400-56094800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:56087400-56111800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr14:56087400-56112200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr14:56087400-56132200	Strong transcription	Dnd41	blood
11	chr14:56087600-56099000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr14:56087600-56099400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr14:56087600-56100400	Weak transcription	Right Ventricle	heart
14	chr14:56087600-56100600	Weak transcription	Fetal Intestine Small	intestine
15	chr14:56087600-56101400	Weak transcription	Pancreas	Pancrea
16	chr14:56087600-56107400	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:56087600-56110000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:56087600-56145200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:56088000-56095400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr14:56088000-56096800	Weak transcription	Small Intestine	intestine
21	chr14:56088000-56096800	Weak transcription	NHLF	lung
22	chr14:56088000-56101200	Weak transcription	Esophagus	oesophagus
23	chr14:56088000-56101600	Weak transcription	Fetal Brain Male	brain
24	chr14:56088000-56103600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:56088200-56096400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr14:56088200-56098600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr14:56088200-56104000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr14:56088200-56108600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr14:56088200-56129400	Weak transcription	Spleen	Spleen
30	chr14:56088200-56132200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:56088400-56096800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr14:56088400-56103600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr14:56088400-56121600	Weak transcription	Aorta	Aorta
34	chr14:56088400-56121800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:56088400-56153200	Weak transcription	Gastric	stomach
36	chr14:56088600-56096800	Weak transcription	Fetal Brain Female	brain
37	chr14:56088600-56101400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr14:56088600-56103600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr14:56090400-56101400	Weak transcription	Brain Germinal Matrix	brain
40	chr14:56090800-56107000	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr14:56091200-56104800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr14:56091600-56100600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr14:56091600-56102000	Weak transcription	Colonic Mucosa	Colon
44	chr14:56091800-56094800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr14:56091800-56096800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr14:56091800-56096800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:56091800-56096800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr14:56091800-56096800	Weak transcription	Fetal Muscle Leg	muscle
49	chr14:56091800-56100400	Weak transcription	Lung	lung
50	chr14:56091800-56101400	Weak transcription	Brain Angular Gyrus	brain

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