Variant report

Variant	rs17128877
Chromosome Location	chr14:56318662-56318663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17128844	1.00[AFR][1000 genomes]
rs17128850	0.90[AFR][1000 genomes]
rs4901604	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56316800-56319000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:56316800-56319000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:56317200-56319000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:56317200-56319200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:56317400-56319000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:56317400-56319000	Enhancers	NHLF	lung
7	chr14:56317400-56319200	Enhancers	HSMMtube	muscle
8	chr14:56317600-56319000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:56317600-56319000	Enhancers	Right Atrium	heart
10	chr14:56317800-56319000	Enhancers	Fetal Heart	heart
11	chr14:56318000-56318800	Enhancers	Fetal Stomach	stomach
12	chr14:56318000-56319200	Enhancers	NHDF-Ad	bronchial
13	chr14:56318200-56319000	Enhancers	Left Ventricle	heart
14	chr14:56318400-56318800	Enhancers	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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