Variant report

Variant	rs17128880
Chromosome Location	chr14:56339644-56339645
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12588715	0.80[ASN][1000 genomes]
rs12590983	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17832491	0.90[AFR][1000 genomes]
rs35787613	0.80[ASN][1000 genomes]
rs72622477	0.85[AFR][1000 genomes]
rs72723583	1.00[AFR][1000 genomes]
rs8019004	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56339400-56340200	Enhancers	Brain Cingulate Gyrus	brain
2	chr14:56339400-56340200	Enhancers	Psoas Muscle	Psoas
3	chr14:56339400-56340200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
4	chr14:56339600-56340400	Enhancers	Brain Hippocampus Middle	brain
5	chr14:56339600-56341600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:56339600-56348600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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