Variant report

Variant	rs1713001
Chromosome Location	chr3:116141816-116141817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1713007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1731597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1731598	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1731601	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1731610	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795249	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1795263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1920193	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2864815	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2902853	0.92[CEU][hapmap]
rs3866148	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4626095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4831140	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6785974	0.82[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116134400-116142000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:116136200-116142000	Weak transcription	Brain Angular Gyrus	brain
4	chr3:116137800-116142000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:116140800-116142200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:116141600-116142200	Enhancers	Colon Smooth Muscle	Colon
7	chr3:116141800-116142000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
8	chr3:116141800-116142000	Enhancers	Brain Substantia Nigra	brain
9	chr3:116141800-116142000	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr3:116141800-116142200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:116141800-116142200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:116141800-116142200	Enhancers	Brain Anterior Caudate	brain
13	chr3:116141800-116142200	Enhancers	Brain Hippocampus Middle	brain
14	chr3:116141800-116142200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:116141800-116142400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:116141800-116142400	Flanking Active TSS	Brain Cingulate Gyrus	brain
17	chr3:116141800-116142600	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr3:116141800-116142800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:116141800-116143200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr3:116141800-116143400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:116141800-116143400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:116141800-116143600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr3:116141800-116143600	Enhancers	Brain Germinal Matrix	brain
24	chr3:116141800-116143800	Enhancers	Cortex derived primary cultured neurospheres	brain

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