Variant report

Variant	rs17131468
Chromosome Location	chr1:71334269-71334270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11811234	1.00[MEX][hapmap]
rs1327464	0.86[CHB][hapmap];0.94[CHD][hapmap];0.91[ASN][1000 genomes]
rs1359835	0.86[CHB][hapmap];0.91[ASN][1000 genomes]
rs1409977	0.93[ASN][1000 genomes]
rs17090678	1.00[MEX][hapmap]
rs35755730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4998697	0.86[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs6424408	0.85[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs6424409	0.86[CHB][hapmap];0.94[ASN][1000 genomes]
rs6656853	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs6672081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs7528081	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7547606	1.00[CHB][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71330800-71343200	Weak transcription	K562	blood
2	chr1:71331400-71334800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:71331600-71337200	Weak transcription	Fetal Heart	heart
4	chr1:71332800-71336600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr1:71332800-71337000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:71332800-71338800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:71333000-71334400	Enhancers	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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