Variant report

Variant	rs17131476
Chromosome Location	chr1:71347417-71347418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71347287..71350966-chr1:71352408..71354626,3	K562	blood:
2	chr1:71340555..71343191-chr1:71344242..71347755,3	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10889891	0.84[ASN][1000 genomes]
rs11209705	0.86[ASN][1000 genomes]
rs11803673	0.84[ASN][1000 genomes]
rs11810467	0.86[ASN][1000 genomes]
rs12023582	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12026099	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12026456	0.86[ASN][1000 genomes]
rs12034333	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12035395	0.90[JPT][hapmap]
rs12040186	0.86[ASN][1000 genomes]
rs12041247	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs12048245	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs12048393	0.82[CHB][hapmap]
rs12049445	0.86[ASN][1000 genomes]
rs12141116	0.80[CHB][hapmap]
rs1591386	0.82[CHB][hapmap]
rs17131473	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17131485	0.88[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs17131487	0.93[YRI][hapmap];0.92[AFR][1000 genomes]
rs17131488	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs2068652	0.88[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2152126	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs2782786	0.82[CHB][hapmap]
rs2782787	0.82[CHB][hapmap]
rs2782788	0.82[CHB][hapmap]
rs2820513	0.83[CHB][hapmap]
rs34087524	0.88[ASN][1000 genomes]
rs34745168	0.88[ASN][1000 genomes]
rs34999609	0.88[AFR][1000 genomes]
rs35368675	0.88[AFR][1000 genomes]
rs35615554	0.88[ASN][1000 genomes]
rs35799180	0.88[AFR][1000 genomes]
rs36021131	0.94[ASN][1000 genomes]
rs55884889	0.95[ASN][1000 genomes]
rs58659672	0.92[AFR][1000 genomes]
rs6661453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6684573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74086786	0.85[ASN][1000 genomes]
rs74086973	0.89[ASN][1000 genomes]
rs74086974	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74086976	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74086980	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74086985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74086993	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74089104	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71341400-71347800	Weak transcription	Aorta	Aorta
2	chr1:71346000-71357000	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links