Variant report

Variant	rs17131499
Chromosome Location	chr1:92061160-92061161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr1:92060640-92062707	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:92060019..92063789-chr1:92065058..92070338,4	K562	blood:
2	chr1:92059728..92061441-chr1:92068842..92071690,2	K562	blood:
3	chr1:92056853..92058906-chr1:92058997..92061738,3	K562	blood:
4	chr1:92038932..92042320-chr1:92059008..92062228,3	K562	blood:
5	chr1:91999544..92001051-chr1:92060316..92062281,2	K562	blood:
6	chr1:92057409..92061312-chr1:92170673..92173610,3	K562	blood:
7	chr1:91869482..91871646-chr1:92060794..92063314,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000229067	TF binding region
ENSG00000229067	Chromatin interaction
ENSG00000162669	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1192405	0.83[ASN][1000 genomes]
rs12024768	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12025820	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12028000	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12028689	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12028899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12029135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12031250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4658244	0.83[ASN][1000 genomes]
rs61233503	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6689719	0.86[CHB][hapmap]
rs72712437	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv946071	chr1:92060669-92067233	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92049600-92061600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:92051800-92067600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:92055400-92061200	Enhancers	Ovary	ovary
4	chr1:92055600-92061400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:92055800-92076400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:92056000-92062200	Enhancers	Fetal Heart	heart
7	chr1:92057200-92070400	Weak transcription	Psoas Muscle	Psoas
8	chr1:92057600-92061600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:92057600-92063400	Enhancers	K562	blood
10	chr1:92057800-92061600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:92058400-92061800	Enhancers	Placenta	Placenta
12	chr1:92058800-92061400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr1:92059600-92066200	Weak transcription	Fetal Stomach	stomach
14	chr1:92059600-92067200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:92059800-92068800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:92060600-92061600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:92060600-92067200	Weak transcription	Lung	lung
18	chr1:92060600-92070200	Weak transcription	Right Ventricle	heart
19	chr1:92060800-92062600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr1:92060800-92066400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr1:92060800-92066400	Weak transcription	Right Atrium	heart
22	chr1:92060800-92067200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:92060800-92067600	Weak transcription	Left Ventricle	heart
24	chr1:92060800-92070200	Weak transcription	Rectal Smooth Muscle	rectum

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