Variant report

Variant	rs17131634
Chromosome Location	chr1:92932235-92932236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10399670	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10399724	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10399865	1.00[EUR][1000 genomes]
rs10399960	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11164364	1.00[EUR][1000 genomes]
rs11164660	1.00[EUR][1000 genomes]
rs11164793	1.00[EUR][1000 genomes]
rs11164794	1.00[EUR][1000 genomes]
rs11164795	1.00[EUR][1000 genomes]
rs11164797	1.00[EUR][1000 genomes]
rs11166390	1.00[EUR][1000 genomes]
rs11166543	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs11485369	0.82[AFR][1000 genomes]
rs12057715	1.00[EUR][1000 genomes]
rs12057860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12058147	1.00[EUR][1000 genomes]
rs12059319	1.00[EUR][1000 genomes]
rs12059473	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12059645	1.00[EUR][1000 genomes]
rs12062143	1.00[EUR][1000 genomes]
rs12063053	1.00[EUR][1000 genomes]
rs12064015	1.00[EUR][1000 genomes]
rs12064732	1.00[EUR][1000 genomes]
rs12065163	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12065702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12066980	1.00[EUR][1000 genomes]
rs12067302	1.00[EUR][1000 genomes]
rs12068883	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12069582	1.00[EUR][1000 genomes]
rs12069690	1.00[EUR][1000 genomes]
rs12069984	1.00[EUR][1000 genomes]
rs12070123	1.00[EUR][1000 genomes]
rs12070249	1.00[EUR][1000 genomes]
rs12071033	1.00[EUR][1000 genomes]
rs12072804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12075870	1.00[EUR][1000 genomes]
rs12076399	1.00[EUR][1000 genomes]
rs12076954	1.00[EUR][1000 genomes]
rs12078738	1.00[EUR][1000 genomes]
rs12080525	1.00[EUR][1000 genomes]
rs12081539	1.00[EUR][1000 genomes]
rs12083424	1.00[EUR][1000 genomes]
rs12084412	1.00[EUR][1000 genomes]
rs12086354	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12088142	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12088549	1.00[EUR][1000 genomes]
rs12088562	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12089666	1.00[EUR][1000 genomes]
rs12091427	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12092747	1.00[EUR][1000 genomes]
rs12093038	1.00[EUR][1000 genomes]
rs12093590	1.00[EUR][1000 genomes]
rs12093905	1.00[EUR][1000 genomes]
rs12094086	1.00[EUR][1000 genomes]
rs12097184	1.00[EUR][1000 genomes]
rs1487538	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17100275	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17131614	1.00[EUR][1000 genomes]
rs17131625	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17131626	1.00[EUR][1000 genomes]
rs28696358	1.00[EUR][1000 genomes]
rs28716853	1.00[EUR][1000 genomes]
rs35166258	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41344152	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs58471288	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59366523	1.00[EUR][1000 genomes]
rs59385116	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59800659	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60332284	1.00[EUR][1000 genomes]
rs6657876	1.00[EUR][1000 genomes]
rs6674426	0.82[AFR][1000 genomes]
rs6679077	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72958765	1.00[EUR][1000 genomes]
rs72958768	1.00[EUR][1000 genomes]
rs72958786	1.00[EUR][1000 genomes]
rs72958791	1.00[EUR][1000 genomes]
rs72960809	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72960813	1.00[EUR][1000 genomes]
rs72960817	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72960824	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72960880	1.00[EUR][1000 genomes]
rs72960900	1.00[EUR][1000 genomes]
rs72962603	1.00[EUR][1000 genomes]
rs72962608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72962610	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72962621	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72962625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72962628	1.00[EUR][1000 genomes]
rs7512045	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9660398	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92925600-92946000	Weak transcription	Right Atrium	heart
2	chr1:92926200-92934200	Enhancers	Dnd41	blood
3	chr1:92926400-92933600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr1:92928600-92933000	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr1:92928600-92933000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:92928600-92933400	Enhancers	Primary T cells from cord blood	blood
7	chr1:92929000-92933400	Enhancers	Thymus	Thymus
8	chr1:92929400-92940600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:92929600-92932600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr1:92929600-92933000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:92929600-92933400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr1:92929600-92933400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:92929600-92933600	Enhancers	Primary hematopoietic stem cells	blood
14	chr1:92929600-92940800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:92930000-92932800	Enhancers	GM12878-XiMat	blood
16	chr1:92930600-92939000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr1:92930600-92939400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:92930800-92932400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr1:92930800-92944400	Weak transcription	Spleen	Spleen
20	chr1:92931000-92939000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr1:92931000-92939000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:92931400-92935000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr1:92931600-92933000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr1:92931600-92933400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr1:92931800-92932600	Enhancers	Primary B cells from peripheral blood	blood
26	chr1:92931800-92932600	Genic enhancers	Fetal Thymus	thymus
27	chr1:92931800-92933600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr1:92932000-92933000	Enhancers	Primary B cells from cord blood	blood
29	chr1:92932000-92933000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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