Variant report

Variant	rs17131672
Chromosome Location	chr1:93405817-93405818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93402979..93405876-chr1:93406414..93410743,3	K562	blood:
2	chr1:93405502..93407115-chr1:93411210..93413800,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10157869	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs10159030	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1114004	1.00[EUR][1000 genomes]
rs13373836	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13374961	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13374962	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131669	1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131670	1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131671	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131673	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131674	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131676	1.00[EUR][1000 genomes]
rs17131677	1.00[EUR][1000 genomes]
rs4394666	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59078677	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60165854	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60684469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61318253	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673190	1.00[EUR][1000 genomes]
rs7515224	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7519363	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7539571	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7552766	1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9324344	1.00[EUR][1000 genomes]
rs9324345	1.00[JPT][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93366400-93409200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:93388200-93408800	Weak transcription	Pancreas	Pancrea
3	chr1:93391200-93408800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:93395000-93407200	Weak transcription	Small Intestine	intestine
5	chr1:93395400-93408800	Weak transcription	Stomach Mucosa	stomach
6	chr1:93395800-93408800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:93399200-93410200	Weak transcription	Right Ventricle	heart
8	chr1:93399600-93408800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:93400400-93408800	Weak transcription	Psoas Muscle	Psoas
10	chr1:93400400-93410200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr1:93400400-93416600	Weak transcription	Fetal Intestine Small	intestine
12	chr1:93400600-93407200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:93400600-93407800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:93400600-93410400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr1:93400800-93408400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:93400800-93408800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:93400800-93421800	Weak transcription	Fetal Lung	lung
18	chr1:93401200-93406000	Weak transcription	HMEC	breast
19	chr1:93401600-93406200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:93401600-93407000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:93401600-93407400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr1:93401800-93406000	Weak transcription	NHEK	skin
23	chr1:93401800-93407200	Weak transcription	Brain Germinal Matrix	brain
24	chr1:93401800-93409200	Weak transcription	Fetal Thymus	thymus
25	chr1:93402000-93408600	Weak transcription	HepG2	liver
26	chr1:93402600-93410200	Weak transcription	Adipose Nuclei	Adipose
27	chr1:93402800-93406000	Enhancers	Primary B cells from peripheral blood	blood
28	chr1:93403000-93407000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr1:93403000-93408400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:93403200-93407000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr1:93403200-93408800	Weak transcription	Primary T cells from cord blood	blood
32	chr1:93403400-93406200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr1:93403400-93409800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr1:93403600-93408800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr1:93404000-93407200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr1:93404200-93408600	Weak transcription	GM12878-XiMat	blood
37	chr1:93404200-93408800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr1:93404600-93406000	Enhancers	Liver	Liver
39	chr1:93404800-93406600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:93405000-93406000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:93405000-93406200	Enhancers	Brain Angular Gyrus	brain
42	chr1:93405000-93406200	Enhancers	Colon Smooth Muscle	Colon
43	chr1:93405200-93406000	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr1:93405200-93406200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr1:93405200-93407000	Weak transcription	Primary B cells from cord blood	blood
46	chr1:93405200-93407200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr1:93405400-93406200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:93405600-93406000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr1:93405600-93406000	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr1:93405600-93406200	Enhancers	Muscle Satellite Cultured Cells	--

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