The 2.0 version of rSNPBase

Variant report

Variant rs17131717
Chromosome Location chr1:93788284-93788285
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93729000-93790200 Weak transcription Osteobl bone
2 chr1:93746600-93789400 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr1:93751600-93794600 Weak transcription Brain Substantia Nigra brain
4 chr1:93753000-93803600 Weak transcription Adipose Nuclei Adipose
5 chr1:93753200-93806400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr1:93755400-93802600 Weak transcription Primary B cells from cord blood blood
7 chr1:93755400-93803200 Weak transcription Fetal Thymus thymus
8 chr1:93755600-93803400 Weak transcription Fetal Intestine Large intestine
9 chr1:93755600-93804200 Weak transcription Brain Anterior Caudate brain
10 chr1:93755800-93790200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr1:93755800-93801400 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr1:93756000-93803800 Weak transcription Primary T cells fromperipheralblood blood
13 chr1:93765800-93809800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr1:93767800-93801400 Weak transcription Primary hematopoietic stem cells blood
15 chr1:93768600-93791600 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr1:93768600-93803000 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr1:93770600-93789400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr1:93770800-93790200 Weak transcription Fetal Intestine Small intestine
19 chr1:93772600-93788800 Weak transcription Right Ventricle heart
20 chr1:93772600-93806000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr1:93779600-93804000 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr1:93780200-93788400 Weak transcription HSMMtube muscle
23 chr1:93780400-93790200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:93782400-93788800 Weak transcription HSMM muscle
25 chr1:93783000-93803400 Weak transcription Left Ventricle heart
26 chr1:93783800-93789800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr1:93783800-93801200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr1:93784400-93804000 Weak transcription Thymus Thymus
29 chr1:93786000-93789800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr1:93786200-93803800 Weak transcription Primary B cells from peripheral blood blood
31 chr1:93786400-93791800 Enhancers Stomach Mucosa stomach
32 chr1:93786800-93788600 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr1:93787400-93788800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:93787400-93789000 Enhancers Gastric stomach
35 chr1:93787400-93789600 Strong transcription Primary T cells from cord blood blood
36 chr1:93787400-93790400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr1:93787600-93788400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr1:93787600-93790000 Weak transcription Duodenum Mucosa Duodenum
39 chr1:93787800-93788400 Enhancers Placenta Amnion Placenta Amnion
40 chr1:93787800-93788400 Enhancers HMEC breast
41 chr1:93787800-93789000 Flanking Active TSS NHEK skin
42 chr1:93788200-93788600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:93788200-93789000 Enhancers Placenta Placenta

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Last update: Aug 31, 2015