Variant report
| Variant | rs17133827 |
|---|---|
| Chromosome Location | chr7:147446115-147446116 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:147446008..147448178-chr7:147448478..147451242,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs10259091 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10282687 | 0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17170666 | 1.00[YRI][hapmap] |
| rs2177722 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs28716224 | 0.99[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs28869855 | 0.89[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs59583114 | 0.84[AFR][1000 genomes] |
| rs73472880 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs7799501 | 0.91[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933973 | chr7:147438206-147549993 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
