Variant report

Variant	rs17135027
Chromosome Location	chr7:101746038-101746039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr7:101745629-101746123	H1-hESC	embryonic stem cell:	n/a	chr7:101745784-101745797
2	POLR2A	chr7:101746036-101746274	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101743613..101746521-chr7:101753167..101754806,2	K562	blood:

Variant related genes	Relation type
CUX1	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10263474	0.82[AMR][1000 genomes]
rs11972888	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs11973970	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11977667	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16869529	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2051962	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs365397	1.00[CHB][hapmap]
rs375417	1.00[CHB][hapmap]
rs381145	1.00[CHB][hapmap]
rs396162	1.00[CHB][hapmap]
rs436090	1.00[CHB][hapmap];0.95[AMR][1000 genomes]
rs59822540	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs6969463	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73408028	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408058	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73408093	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73408094	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs73412036	0.82[AMR][1000 genomes]
rs73412046	0.82[AMR][1000 genomes]
rs965863	1.00[CHB][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:101716000-101746600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr7:101726200-101747800	Weak transcription	Osteobl	bone
7	chr7:101733200-101749600	Weak transcription	Esophagus	oesophagus
8	chr7:101733200-101758600	Weak transcription	Psoas Muscle	Psoas
9	chr7:101737400-101746200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:101737400-101747600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:101737400-101754400	Weak transcription	Brain Angular Gyrus	brain
12	chr7:101738000-101749800	Weak transcription	Fetal Heart	heart
13	chr7:101738200-101747200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:101738200-101751800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:101738200-101754400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:101738400-101760800	Weak transcription	NHDF-Ad	bronchial
17	chr7:101738600-101758400	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr7:101738800-101754400	Weak transcription	Brain Germinal Matrix	brain
20	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
22	chr7:101739000-101760600	Weak transcription	NHLF	lung
23	chr7:101739200-101760600	Weak transcription	HSMM	muscle
24	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr7:101739400-101751800	Strong transcription	Primary T cells from cord blood	blood
26	chr7:101739600-101752000	Strong transcription	Thymus	Thymus
27	chr7:101739800-101747600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr7:101740200-101747600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr7:101740200-101748000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:101740200-101753200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:101740400-101746200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr7:101740400-101751800	Strong transcription	Spleen	Spleen
33	chr7:101740400-101763400	Strong transcription	Dnd41	blood
34	chr7:101740400-101764000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:101740600-101746600	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr7:101740600-101746800	Strong transcription	Fetal Muscle Trunk	muscle
37	chr7:101740800-101752000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:101741000-101751600	Strong transcription	Fetal Stomach	stomach
39	chr7:101741000-101751800	Strong transcription	Adipose Nuclei	Adipose
40	chr7:101741000-101757200	Weak transcription	NH-A	brain
41	chr7:101741000-101765000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr7:101741200-101746600	Weak transcription	Fetal Kidney	kidney
43	chr7:101741200-101747000	Strong transcription	Lung	lung
44	chr7:101741200-101748200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr7:101741200-101751400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr7:101741200-101753000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:101741400-101748200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr7:101741400-101751800	Strong transcription	Liver	Liver
49	chr7:101741400-101754000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr7:101741600-101746200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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