Variant report

Variant	rs17135072
Chromosome Location	chr7:101818331-101818332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101815857..101818504-chr7:101821759..101823294,2	MCF-7	breast:
2	chr7:101818168..101820357-chr7:101820533..101822858,2	K562	blood:
3	chr7:101812896..101815605-chr7:101816057..101818792,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10227131	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10248171	1.00[ASN][1000 genomes]
rs1107462	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1107463	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1297620	1.00[ASN][1000 genomes]
rs16869536	1.00[JPT][hapmap]
rs17135077	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201435	1.00[JPT][hapmap]
rs201436	1.00[JPT][hapmap]
rs201441	1.00[JPT][hapmap]
rs201442	1.00[JPT][hapmap]
rs201443	1.00[JPT][hapmap]
rs201445	1.00[JPT][hapmap]
rs201448	1.00[JPT][hapmap]
rs201449	1.00[JPT][hapmap]
rs201450	1.00[JPT][hapmap]
rs201454	1.00[JPT][hapmap]
rs201455	1.00[JPT][hapmap]
rs201456	1.00[JPT][hapmap]
rs201458	1.00[JPT][hapmap]
rs201459	1.00[JPT][hapmap]
rs201468	1.00[JPT][hapmap]
rs2268029	1.00[ASN][1000 genomes]
rs2268031	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268032	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28607250	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28688706	0.80[ASN][1000 genomes]
rs28715132	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs382270	1.00[JPT][hapmap]
rs382934	1.00[JPT][hapmap]
rs386207	1.00[JPT][hapmap]
rs392606	1.00[ASN][1000 genomes]
rs395848	1.00[JPT][hapmap]
rs57242832	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57517296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57634989	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58179454	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59140055	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60345263	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60679727	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60795390	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61170107	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61212564	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61232541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61484374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6976246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs73408014	0.89[EUR][1000 genomes]
rs7788329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs7800374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9691705	1.00[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101784800-101821600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr7:101784800-101822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr7:101797200-101818400	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:101797200-101818600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:101797200-101821400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:101797200-101827800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:101797200-101832000	Weak transcription	Fetal Heart	heart
8	chr7:101797800-101852200	Weak transcription	NHEK	skin
9	chr7:101800400-101850000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr7:101800600-101851800	Strong transcription	Fetal Intestine Small	intestine
11	chr7:101801200-101819800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:101805400-101862200	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr7:101807400-101821400	Weak transcription	Aorta	Aorta
15	chr7:101808000-101820800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:101808200-101818600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:101808200-101821400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr7:101808200-101824200	Strong transcription	Dnd41	blood
19	chr7:101808200-101840200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:101808400-101868400	Strong transcription	Thymus	Thymus
21	chr7:101810000-101821600	Weak transcription	Esophagus	oesophagus
22	chr7:101810400-101820800	Weak transcription	Right Ventricle	heart
23	chr7:101811800-101819800	Strong transcription	Primary T cells from cord blood	blood
24	chr7:101812400-101822600	Weak transcription	Small Intestine	intestine
25	chr7:101812400-101860800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr7:101812600-101863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:101812600-101867000	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr7:101812600-101867000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr7:101812800-101819400	Strong transcription	Fetal Thymus	thymus
30	chr7:101813200-101823600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:101813200-101852000	Weak transcription	NHDF-Ad	bronchial
32	chr7:101813400-101832000	Strong transcription	Fetal Stomach	stomach
33	chr7:101813600-101818800	Strong transcription	Liver	Liver
34	chr7:101813600-101821600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr7:101813600-101832200	Weak transcription	NHLF	lung
36	chr7:101813800-101818600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr7:101813800-101819600	Strong transcription	Placenta Amnion	Placenta Amnion
38	chr7:101813800-101819600	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr7:101813800-101819800	Strong transcription	Fetal Intestine Large	intestine
40	chr7:101813800-101821000	Weak transcription	A549	lung
41	chr7:101813800-101822600	Weak transcription	Fetal Kidney	kidney
42	chr7:101813800-101860800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr7:101814000-101818400	Weak transcription	Brain Hippocampus Middle	brain
44	chr7:101814000-101818600	Weak transcription	Brain Anterior Caudate	brain
45	chr7:101814000-101818600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:101814000-101818600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:101814000-101818800	Weak transcription	Brain Germinal Matrix	brain
48	chr7:101814000-101819200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:101814000-101819800	Strong transcription	Lung	lung
50	chr7:101814000-101829000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links