Variant report

Variant	rs17139736
Chromosome Location	chr7:104296392-104296393
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104289452..104292875-chr7:104293659..104297243,4	K562	blood:
2	chr7:104289452..104291621-chr7:104294390..104297243,3	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10216008	0.84[AMR][1000 genomes]
rs10231269	0.86[EUR][1000 genomes]
rs10242238	1.00[CEU][hapmap]
rs10245966	1.00[CEU][hapmap]
rs10246540	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10265185	1.00[CEU][hapmap]
rs10272959	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10275240	1.00[CEU][hapmap]
rs10277884	1.00[CEU][hapmap]
rs10280659	0.89[EUR][1000 genomes]
rs10487218	1.00[CEU][hapmap]
rs11760660	1.00[CEU][hapmap]
rs11761636	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11761854	0.85[CEU][hapmap]
rs11762558	0.89[EUR][1000 genomes]
rs11766478	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11770573	1.00[CEU][hapmap]
rs11773248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11977439	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11983223	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs13438590	1.00[CEU][hapmap]
rs1465342	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16870065	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17139105	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17139109	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17139166	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17139722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17421950	1.00[CEU][hapmap]
rs17490468	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs17490509	1.00[CEU][hapmap]
rs17490551	1.00[CEU][hapmap]
rs17490586	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1990704	1.00[CEU][hapmap]
rs2193198	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2193200	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2193204	1.00[CEU][hapmap]
rs2193205	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2193212	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2193214	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2385247	0.89[JPT][hapmap]
rs2385248	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2385254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2891725	1.00[CEU][hapmap]
rs2891729	1.00[CEU][hapmap]
rs35022976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3919550	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4131017	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4236571	1.00[CEU][hapmap]
rs4317508	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4335061	0.80[CHB][hapmap]
rs4357228	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4612275	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4620217	1.00[CEU][hapmap]
rs59929156	0.97[EUR][1000 genomes]
rs6944590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6948948	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6964099	1.00[CEU][hapmap]
rs6967399	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs73181816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73181817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs759533	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7784639	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7791120	1.00[CEU][hapmap]
rs7801040	1.00[CEU][hapmap]
rs7805947	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs929661	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs962648	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024532	chr7:104281393-104299847	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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