Variant report

Variant	rs17141707
Chromosome Location	chr5:116741879-116741880
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17141721	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17141755	1.00[EUR][1000 genomes]
rs17141759	1.00[EUR][1000 genomes]
rs2162750	1.00[EUR][1000 genomes]
rs4260708	1.00[EUR][1000 genomes]
rs56146566	1.00[EUR][1000 genomes]
rs58752187	1.00[EUR][1000 genomes]
rs73254985	1.00[EUR][1000 genomes]
rs73256882	1.00[EUR][1000 genomes]
rs73258850	1.00[EUR][1000 genomes]
rs73258855	1.00[EUR][1000 genomes]
rs73262742	1.00[EUR][1000 genomes]
rs73262773	1.00[EUR][1000 genomes]
rs73270527	1.00[EUR][1000 genomes]
rs73785735	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882755	chr5:116647725-116748877	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599487	chr5:116732456-116772093	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116741200-116742000	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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