Variant report

Variant	rs17141817
Chromosome Location	chr5:116799810-116799811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13159905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13164003	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13177703	1.00[JPT][hapmap]
rs17141919	0.91[ASN][1000 genomes]
rs197448	0.83[ASN][1000 genomes]
rs265924	0.83[ASN][1000 genomes]
rs265925	0.83[ASN][1000 genomes]
rs55688554	1.00[ASN][1000 genomes]
rs56362592	1.00[ASN][1000 genomes]
rs57106106	0.91[ASN][1000 genomes]
rs61265792	0.91[ASN][1000 genomes]
rs62380099	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73258808	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73258853	0.91[ASN][1000 genomes]
rs73258859	0.91[ASN][1000 genomes]
rs73258885	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882756	chr5:116783660-116905052	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv969245	chr5:116796952-116800030	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116798800-116800400	Enhancers	HSMM	muscle
2	chr5:116799000-116800400	Enhancers	Brain Substantia Nigra	brain
3	chr5:116799200-116800200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:116799200-116800200	Enhancers	Brain Germinal Matrix	brain
5	chr5:116799400-116800200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:116799400-116800200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:116799400-116800400	Enhancers	Fetal Brain Male	brain
8	chr5:116799400-116801000	Enhancers	Rectal Smooth Muscle	rectum
9	chr5:116799600-116800000	Enhancers	HSMMtube	muscle
10	chr5:116799600-116800200	Enhancers	Brain Hippocampus Middle	brain
11	chr5:116799600-116800400	Enhancers	Adipose Nuclei	Adipose
12	chr5:116799600-116800400	Enhancers	Brain Anterior Caudate	brain
13	chr5:116799600-116800400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr5:116799600-116800400	Enhancers	Fetal Brain Female	brain
15	chr5:116799600-116800400	Enhancers	Fetal Stomach	stomach
16	chr5:116799600-116801000	Enhancers	Colon Smooth Muscle	Colon
17	chr5:116799800-116800000	Enhancers	Brain Angular Gyrus	brain
18	chr5:116799800-116800200	Enhancers	Brain Cingulate Gyrus	brain
19	chr5:116799800-116800400	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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