Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1110512	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12110125	0.88[ASN][1000 genomes]
rs12110310	0.87[ASN][1000 genomes]
rs13152964	1.00[EUR][1000 genomes]
rs13171299	0.91[EUR][1000 genomes]
rs1559072	0.90[ASN][1000 genomes]
rs17144520	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17144523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17144526	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17144550	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17144551	0.97[AFR][1000 genomes]
rs17144552	1.00[YRI][hapmap]
rs17144554	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17144584	0.94[ASN][1000 genomes]
rs1835048	0.84[ASN][1000 genomes]
rs34694285	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58999502	0.97[AFR][1000 genomes]
rs721065	0.84[ASN][1000 genomes]
rs73249197	0.92[AFR][1000 genomes]
rs73789377	0.97[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7719304	0.94[ASN][1000 genomes]
rs888710	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs888711	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1034487	chr5:118047803-118085925	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118083400-118085400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:118084600-118085800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:118084800-118085400	Enhancers	Fetal Lung	lung
4	chr5:118084800-118085600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:118084800-118085600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr5:118084800-118085600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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