Variant report

Variant	rs17144529
Chromosome Location	chr5:118086233-118086234
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1110512	0.80[AFR][1000 genomes]
rs17144515	0.96[AFR][1000 genomes]
rs17144543	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17144550	0.80[AFR][1000 genomes]
rs17144551	0.80[AFR][1000 genomes]
rs17144554	0.80[AFR][1000 genomes]
rs58999502	0.80[AFR][1000 genomes]
rs61107205	0.96[AFR][1000 genomes]
rs73249197	0.80[AFR][1000 genomes]
rs73789377	0.80[AFR][1000 genomes]
rs888710	0.80[AFR][1000 genomes]
rs888711	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118085400-118088200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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