Variant report

Variant	rs17144571
Chromosome Location	chr5:118104875-118104876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1156413	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1397582	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1397583	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1473231	0.81[AMR][1000 genomes]
rs1510975	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17144532	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17144539	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17144540	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17144549	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17144580	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17144586	0.95[ASN][1000 genomes]
rs17144591	0.95[ASN][1000 genomes]
rs17144596	0.95[ASN][1000 genomes]
rs17144602	0.95[ASN][1000 genomes]
rs17144603	1.00[ASN][1000 genomes]
rs17144604	1.00[ASN][1000 genomes]
rs17144620	0.85[ASN][1000 genomes]
rs17144623	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17144624	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17144636	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17144640	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17144648	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17144657	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17144732	0.81[AMR][1000 genomes]
rs17144738	0.81[AMR][1000 genomes]
rs17144744	0.81[AMR][1000 genomes]
rs17144795	0.81[AMR][1000 genomes]
rs17144813	0.81[AMR][1000 genomes]
rs17144818	0.81[AMR][1000 genomes]
rs918389	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv882768	chr5:118088385-118133786	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv882769	chr5:118088385-118154368	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv882770	chr5:118089798-118133786	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118103600-118105400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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