Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1156413	0.89[ASN][1000 genomes]
rs11959825	0.87[EUR][1000 genomes]
rs1397582	0.95[ASN][1000 genomes]
rs1397583	0.95[ASN][1000 genomes]
rs1510975	0.95[ASN][1000 genomes]
rs17144532	0.95[ASN][1000 genomes]
rs17144539	0.95[ASN][1000 genomes]
rs17144540	0.95[ASN][1000 genomes]
rs17144549	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17144571	0.95[ASN][1000 genomes]
rs17144580	0.95[ASN][1000 genomes]
rs17144586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17144591	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17144602	1.00[ASN][1000 genomes]
rs17144603	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17144604	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17144620	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17144623	0.86[ASN][1000 genomes]
rs17144624	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17144636	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17144640	0.95[ASN][1000 genomes]
rs17144648	0.89[ASN][1000 genomes]
rs17144657	0.89[ASN][1000 genomes]
rs6880225	0.84[ASN][1000 genomes]
rs918389	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv882768	chr5:118088385-118133786	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv882769	chr5:118088385-118154368	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv882770	chr5:118089798-118133786	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118107000-118110200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr5:118109000-118112600	Weak transcription	Pancreas	Pancrea
3	chr5:118109400-118111800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:118109800-118110400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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