Variant report

Variant	rs17144645
Chromosome Location	chr7:122270327-122270328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10464665	1.00[CEU][hapmap]
rs10487754	0.85[CHB][hapmap]
rs1686	0.81[JPT][hapmap]
rs17144729	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs17144731	0.90[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs17144754	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs2159824	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs3919525	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs4140960	0.90[CEU][hapmap];0.81[JPT][hapmap]
rs62482255	0.89[EUR][1000 genomes]
rs6466836	0.85[CHB][hapmap]
rs6466838	0.85[CHB][hapmap]
rs67310961	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9640810	0.90[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122254800-122271400	Weak transcription	Left Ventricle	heart
2	chr7:122268200-122270800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:122269800-122288000	Weak transcription	HepG2	liver
4	chr7:122270200-122270600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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