Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11741644	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948942	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952441	1.00[ASN][1000 genomes]
rs17147688	1.00[ASN][1000 genomes]
rs17147694	1.00[ASN][1000 genomes]
rs17147703	1.00[ASN][1000 genomes]
rs17449200	1.00[ASN][1000 genomes]
rs34429875	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35631466	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4385235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895173	1.00[ASN][1000 genomes]
rs607107	1.00[ASN][1000 genomes]
rs621433	1.00[ASN][1000 genomes]
rs62380463	1.00[ASN][1000 genomes]
rs62380506	1.00[ASN][1000 genomes]
rs649659	1.00[ASN][1000 genomes]
rs6595289	1.00[ASN][1000 genomes]
rs6595290	1.00[ASN][1000 genomes]
rs6595291	1.00[ASN][1000 genomes]
rs7704634	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599606	chr5:120219340-120776767	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882797	chr5:120359319-120757262	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv33642	chr5:120380525-120848760	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2754268	chr5:120398198-120745053	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1033162	chr5:120685951-120736122	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1023679	chr5:120689805-120890257	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:120713000-120714200	Enhancers	HUVEC	blood vessel
2	chr5:120713000-120715000	Enhancers	Dnd41	blood
3	chr5:120713600-120714200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:120713800-120714400	Enhancers	Ovary	ovary
5	chr5:120713800-120715000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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