Variant report
| Variant | rs17150154 |
|---|---|
| Chromosome Location | chr7:126370039-126370040 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:126345298..126347848-chr7:126367419..126370072,2 | K562 | blood: | |
| 2 | chr7:126363919..126365530-chr7:126368922..126370814,2 | K562 | blood: | |
| 3 | chr7:126368803..126371577-chr7:126373352..126375062,2 | K562 | blood: | |
| 4 | chr7:126338487..126341370-chr7:126368124..126371050,2 | K562 | blood: | |
| 5 | 7:126366539-126370331..7:126890676-126899918 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs1018878 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs1362003 | 1.00[AMR][1000 genomes] |
| rs17150116 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs17150207 | 1.00[YRI][hapmap] |
| rs17150214 | 1.00[YRI][hapmap] |
| rs59488715 | 0.82[AFR][1000 genomes] |
| rs59552114 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59684804 | 0.87[AFR][1000 genomes] |
| rs59960516 | 0.87[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
