Variant report

Variant	rs17150739
Chromosome Location	chr11:56252468-56252469
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10400288	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10501354	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10736676	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10736677	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10736678	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10750820	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10792038	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10792039	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10792040	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10792043	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10896480	0.91[ASN][1000 genomes]
rs10896501	0.85[EUR][1000 genomes]
rs11227917	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11228212	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11228641	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11228673	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]
rs11228676	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11228684	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11228686	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11228687	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11228693	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11228694	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11228698	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11228701	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11228706	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11228708	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12222989	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12223492	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12418150	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12418301	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1473592	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1605924	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1945196	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1945210	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945261	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1945263	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1945282	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2202932	0.88[ASN][1000 genomes]
rs2511143	1.00[ASN][1000 genomes]
rs2865516	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs33995115	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3938998	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4500505	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939034	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4939035	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4939043	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4939061	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4939065	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4939066	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs583216	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs583589	1.00[ASN][1000 genomes]
rs584608	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs588805	1.00[ASN][1000 genomes]
rs592744	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596212	0.97[ASN][1000 genomes]
rs597680	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs600187	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs60446066	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs611397	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs614942	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs61710550	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs628524	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs637912	1.00[ASN][1000 genomes]
rs642630	1.00[ASN][1000 genomes]
rs643384	1.00[ASN][1000 genomes]
rs645351	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs646286	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs654634	1.00[ASN][1000 genomes]
rs655779	1.00[ASN][1000 genomes]
rs656565	1.00[ASN][1000 genomes]
rs6591323	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6591381	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs674431	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs676901	1.00[ASN][1000 genomes]
rs688832	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7924528	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7928704	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7939886	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971758	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv1046487	chr11:56228761-56310644	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56251000-56253200	Weak transcription	Fetal Intestine Small	intestine
2	chr11:56251200-56253600	Weak transcription	Fetal Intestine Large	intestine

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