Variant report

Variant	rs17151175
Chromosome Location	chr8:9992524-9992525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9985940..9988660-chr8:9990986..9993361,2	K562	blood:
2	chr8:9989052..9991739-chr8:9991879..9993683,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10095187	1.00[EUR][1000 genomes]
rs10104376	1.00[EUR][1000 genomes]
rs10104651	0.83[AMR][1000 genomes]
rs10107815	1.00[EUR][1000 genomes]
rs12334619	1.00[EUR][1000 genomes]
rs12674871	0.83[YRI][hapmap]
rs13256357	0.83[YRI][hapmap]
rs13362873	1.00[EUR][1000 genomes]
rs17151128	0.84[ASW][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes]
rs17151195	1.00[EUR][1000 genomes]
rs17151325	1.00[EUR][1000 genomes]
rs28595664	1.00[EUR][1000 genomes]
rs28674018	1.00[EUR][1000 genomes]
rs60515866	1.00[EUR][1000 genomes]
rs60517239	0.83[AMR][1000 genomes]
rs6984706	1.00[EUR][1000 genomes]
rs6999817	1.00[EUR][1000 genomes]
rs73530939	1.00[EUR][1000 genomes]
rs73662805	1.00[EUR][1000 genomes]
rs7826230	0.83[AMR][1000 genomes]
rs9329217	1.00[EUR][1000 genomes]
rs9657534	0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9657537	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1034343	chr8:9948342-10014155	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9970600-9995800	Weak transcription	Pancreas	Pancrea
2	chr8:9986200-10002200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:9987200-9995800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:9988800-9996200	Weak transcription	Brain Hippocampus Middle	brain
5	chr8:9988800-10002200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:9989000-9995000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:9989000-9995200	Weak transcription	Brain Angular Gyrus	brain
8	chr8:9989000-10000400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:9990000-9992800	Enhancers	Liver	Liver
10	chr8:9991000-9992800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:9991200-9997600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:9991200-10004600	Weak transcription	Esophagus	oesophagus
13	chr8:9991600-9996000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr8:9991800-9992600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr8:9991800-9992600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr8:9991800-9992600	Flanking Active TSS	Fetal Heart	heart
17	chr8:9991800-9992800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:9991800-9992800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr8:9991800-9993400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:9991800-9995800	Enhancers	Fetal Brain Female	brain
21	chr8:9992000-9992600	Enhancers	Brain Anterior Caudate	brain
22	chr8:9992000-9992600	Enhancers	Brain Germinal Matrix	brain
23	chr8:9992000-9997400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:9992200-9992800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:9992200-9992800	Bivalent Enhancer	HepG2	liver
26	chr8:9992200-9993400	Weak transcription	Fetal Brain Male	brain
27	chr8:9992200-9995200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:9992200-9995200	Weak transcription	Fetal Intestine Small	intestine
29	chr8:9992200-9995400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr8:9992200-9995800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr8:9992200-9995800	Weak transcription	Left Ventricle	heart
32	chr8:9992200-9995800	Weak transcription	Lung	lung
33	chr8:9992200-9995800	Weak transcription	Right Atrium	heart
34	chr8:9992200-10004800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr8:9992200-10004800	Weak transcription	Right Ventricle	heart
36	chr8:9992400-9992600	Enhancers	Brain Substantia Nigra	brain
37	chr8:9992400-10000600	Weak transcription	H1 Cell Line	embryonic stem cell

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