Variant report

Variant	rs17151658
Chromosome Location	chr8:10161877-10161878
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10087391	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10089339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10090440	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10097184	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10111917	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10112446	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10903321	1.00[CHB][hapmap]
rs11249975	1.00[ASN][1000 genomes]
rs11774220	1.00[CHB][hapmap]
rs11774276	1.00[ASN][1000 genomes]
rs11776035	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11776973	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11780122	1.00[CHB][hapmap]
rs11783705	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12156030	1.00[ASN][1000 genomes]
rs12156387	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13252589	1.00[CHB][hapmap]
rs13258409	1.00[ASN][1000 genomes]
rs13263482	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13263803	1.00[ASN][1000 genomes]
rs13272793	1.00[CHB][hapmap]
rs13275453	1.00[ASN][1000 genomes]
rs13279701	1.00[CHB][hapmap]
rs1484641	1.00[CHB][hapmap]
rs17151667	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151675	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151684	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151697	0.88[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151699	1.00[CHB][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151713	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17151728	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151741	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151745	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151748	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151763	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17690549	1.00[CHB][hapmap]
rs17693945	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17694485	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17707665	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17707988	1.00[CHB][hapmap]
rs17708090	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17708114	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17746227	1.00[CHB][hapmap]
rs17746245	1.00[CHB][hapmap]
rs17747335	1.00[CHB][hapmap]
rs17750324	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17751178	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28507813	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28587507	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28611339	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28870492	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34487797	1.00[ASN][1000 genomes]
rs34919878	1.00[ASN][1000 genomes]
rs4240640	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4394398	1.00[ASN][1000 genomes]
rs4840467	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4840476	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841294	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4841295	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4841296	1.00[CHB][hapmap]
rs4841312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841356	1.00[CHB][hapmap]
rs55968335	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56220175	0.85[EUR][1000 genomes]
rs59119294	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61456761	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66666973	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67773656	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985941	1.00[CHB][hapmap]
rs6994060	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6997224	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014570	1.00[CHB][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73193549	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822745	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834714	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835507	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7835960	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840347	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1028650	chr8:10101815-10178537	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv610264	chr8:10158428-10181176	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10144400-10167000	Weak transcription	Right Ventricle	heart
2	chr8:10149400-10163400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:10151400-10177000	Weak transcription	Fetal Intestine Small	intestine
4	chr8:10151400-10178800	Weak transcription	Spleen	Spleen
5	chr8:10153400-10167000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:10154400-10163200	Weak transcription	Esophagus	oesophagus
7	chr8:10157200-10177600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:10158000-10177400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr8:10158200-10163400	Weak transcription	Primary T cells from cord blood	blood
10	chr8:10158600-10166800	Weak transcription	Lung	lung
11	chr8:10158600-10178200	Weak transcription	Brain Anterior Caudate	brain
12	chr8:10158800-10177600	Weak transcription	Primary B cells from cord blood	blood
13	chr8:10159000-10177400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr8:10159200-10170600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:10160200-10170400	Weak transcription	Fetal Brain Female	brain
16	chr8:10160600-10162000	Weak transcription	Aorta	Aorta
17	chr8:10160600-10166200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr8:10160600-10167800	Weak transcription	Liver	Liver
19	chr8:10160800-10162800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:10161000-10165600	Weak transcription	Brain Germinal Matrix	brain
21	chr8:10161000-10165800	Weak transcription	Fetal Brain Male	brain
22	chr8:10161400-10162200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:10161400-10164000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr8:10161800-10177600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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