Variant report

Variant	rs17152230
Chromosome Location	chr7:105506737-105506738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105506358..105508649-chr7:105509377..105511928,3	MCF-7	breast:
2	chr7:105493324..105495060-chr7:105505004..105507170,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10262872	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10278160	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13237306	0.83[MKK][hapmap]
rs17152231	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17152247	0.88[CEU][hapmap]
rs2158897	1.00[ASW][hapmap]
rs7786721	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv464669	chr7:105504201-105533735	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv608070	chr7:105504201-105533735	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105480000-105515600	Weak transcription	Ovary	ovary
2	chr7:105488000-105515600	Weak transcription	Aorta	Aorta
3	chr7:105490200-105515600	Weak transcription	Gastric	stomach
4	chr7:105490200-105516200	Weak transcription	Thymus	Thymus
5	chr7:105490800-105509200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:105491000-105511600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:105491600-105511600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:105491600-105515200	Weak transcription	Spleen	Spleen
9	chr7:105491800-105515400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:105492800-105515800	Weak transcription	A549	lung
11	chr7:105493200-105516400	Weak transcription	Lung	lung
12	chr7:105494600-105514000	Weak transcription	Placenta	Placenta
13	chr7:105494800-105508600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:105494800-105510000	Weak transcription	Small Intestine	intestine
15	chr7:105494800-105515600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:105495000-105514800	Weak transcription	Brain Germinal Matrix	brain
17	chr7:105495000-105515200	Weak transcription	Right Atrium	heart
18	chr7:105495000-105515600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:105495200-105507000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:105495200-105508600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:105495200-105508800	Weak transcription	Fetal Brain Female	brain
22	chr7:105495200-105511400	Weak transcription	HUVEC	blood vessel
23	chr7:105495200-105512800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:105495200-105513000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:105495200-105515000	Weak transcription	Fetal Brain Male	brain
26	chr7:105495200-105515200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:105495200-105515400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:105495200-105515400	Weak transcription	Brain Angular Gyrus	brain
29	chr7:105495200-105515400	Weak transcription	Brain Anterior Caudate	brain
30	chr7:105495200-105515400	Weak transcription	Fetal Kidney	kidney
31	chr7:105495200-105515400	Weak transcription	Fetal Lung	lung
32	chr7:105495200-105515600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:105495200-105515600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr7:105495400-105508600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr7:105495400-105515200	Weak transcription	Brain Hippocampus Middle	brain
36	chr7:105495600-105513000	Weak transcription	NHLF	lung
37	chr7:105496000-105515000	Weak transcription	NHDF-Ad	bronchial
38	chr7:105498000-105515600	Weak transcription	Colonic Mucosa	Colon
39	chr7:105498800-105513800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr7:105499000-105513600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr7:105499000-105515800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:105499200-105507800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr7:105499200-105513800	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr7:105499200-105515400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr7:105499600-105514800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr7:105500800-105514800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr7:105501400-105510000	Strong transcription	Fetal Stomach	stomach
48	chr7:105501600-105510000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr7:105501800-105511600	Weak transcription	HepG2	liver
50	chr7:105502600-105509400	Weak transcription	Rectal Mucosa Donor 31	rectum

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