Variant report

Variant	rs17152260
Chromosome Location	chr7:105538882-105538883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17152247	0.94[EUR][1000 genomes]
rs58892337	0.84[EUR][1000 genomes]
rs9791835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105518400-105562800	Weak transcription	Aorta	Aorta
2	chr7:105518800-105548200	Weak transcription	Right Atrium	heart
3	chr7:105519000-105542600	Weak transcription	A549	lung
4	chr7:105519800-105550600	Weak transcription	NHLF	lung
5	chr7:105520000-105545600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:105520000-105549600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:105520000-105549600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:105520200-105550400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:105522400-105549600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:105525800-105542400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:105526000-105541600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:105526400-105547200	Weak transcription	Adipose Nuclei	Adipose
13	chr7:105527800-105547000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:105527800-105547000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:105528600-105541000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:105528600-105541800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:105531400-105542400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:105532600-105546800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:105533200-105547000	Weak transcription	Fetal Stomach	stomach
20	chr7:105533200-105550600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:105535400-105544400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:105535800-105564800	Weak transcription	Ovary	ovary
23	chr7:105535800-105566600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:105536000-105551400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:105536200-105539400	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr7:105536400-105539000	Enhancers	Primary T cells from cord blood	blood
27	chr7:105536400-105542400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:105536400-105542600	Weak transcription	NHDF-Ad	bronchial
29	chr7:105536800-105539000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr7:105537000-105539000	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr7:105537200-105539000	Enhancers	Duodenum Mucosa	Duodenum
32	chr7:105537200-105539000	Enhancers	Gastric	stomach
33	chr7:105537400-105540000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:105537400-105551200	Weak transcription	Liver	Liver
35	chr7:105537600-105539800	Weak transcription	Fetal Muscle Leg	muscle
36	chr7:105537600-105540200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:105537600-105541200	Weak transcription	Colon Smooth Muscle	Colon
38	chr7:105537800-105546600	Weak transcription	Fetal Brain Female	brain
39	chr7:105538000-105541200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr7:105538200-105550200	Weak transcription	Fetal Intestine Small	intestine
41	chr7:105538800-105539000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr7:105538800-105539000	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr7:105538800-105541600	Weak transcription	Fetal Lung	lung
44	chr7:105538800-105549600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr7:105538800-105564200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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