Variant report

Variant	rs17152410
Chromosome Location	chr8:10645114-10645115
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10644063..10645864-chr8:10646300..10647918,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10089548	0.89[ASN][1000 genomes]
rs10089869	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10096939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10099100	0.83[ASN][1000 genomes]
rs10110723	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10481452	1.00[ASN][1000 genomes]
rs10503411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10503412	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1078543	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1139066	0.83[ASN][1000 genomes]
rs1139843	1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs11774457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11778578	1.00[ASN][1000 genomes]
rs11779090	1.00[ASN][1000 genomes]
rs11779094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11779336	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs11783803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784335	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13250710	0.95[ASN][1000 genomes]
rs13265197	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13269447	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17152366	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17152412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152542	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17774023	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2163381	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2409660	0.89[ASN][1000 genomes]
rs2409664	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28544530	0.81[EUR][1000 genomes]
rs28675255	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2898245	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2898250	0.85[ASN][1000 genomes]
rs4240668	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4840514	0.90[ASN][1000 genomes]
rs4840515	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4840518	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs4841440	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4841447	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4841448	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4841449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4841455	0.80[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs58297791	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58772184	0.83[ASN][1000 genomes]
rs6983956	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6984094	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7003456	1.00[CHD][hapmap]
rs7008259	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012879	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7350075	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7350124	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs73542533	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73544348	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73546269	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815184	1.00[CHD][hapmap]
rs7822666	1.00[CHD][hapmap]
rs7836178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs891560	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
5	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
8	nsv519768	chr8:10600254-10691993	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1024806	chr8:10605438-10662555	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1031709	chr8:10610545-10657726	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv2764105	chr8:10610557-10657726	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv519376	chr8:10611708-10691993	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
14	nsv429860	chr8:10615990-10685890	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
15	nsv1023085	chr8:10617908-10657584	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv539470	chr8:10617908-10657584	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv1019754	chr8:10617908-10700140	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
18	nsv539471	chr8:10617908-10700140	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
19	nsv1026230	chr8:10618928-10652924	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv539472	chr8:10618928-10652924	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv1031726	chr8:10627742-10749369	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10610800-10662000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr8:10618800-10646200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:10618800-10665200	Weak transcription	Fetal Brain Female	brain
4	chr8:10619200-10656400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:10619400-10661600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr8:10620000-10669800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr8:10621200-10662000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr8:10621400-10656000	Weak transcription	HepG2	liver
9	chr8:10622800-10656000	Weak transcription	A549	lung
10	chr8:10623200-10650000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr8:10623400-10646400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:10623400-10656800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr8:10623400-10662600	Weak transcription	Fetal Thymus	thymus
14	chr8:10623400-10662800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr8:10623400-10665000	Weak transcription	Fetal Intestine Large	intestine
16	chr8:10623600-10648800	Weak transcription	Fetal Intestine Small	intestine
17	chr8:10623600-10667000	Weak transcription	Thymus	Thymus
18	chr8:10623800-10648800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr8:10623800-10649600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr8:10623800-10656800	Weak transcription	Gastric	stomach
21	chr8:10624000-10649600	Weak transcription	Pancreas	Pancrea
22	chr8:10624800-10646800	Weak transcription	Brain Germinal Matrix	brain
23	chr8:10630400-10646200	Weak transcription	GM12878-XiMat	blood
24	chr8:10634400-10645800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:10634400-10646400	Weak transcription	Lung	lung
26	chr8:10634400-10646600	Weak transcription	Spleen	Spleen
27	chr8:10634600-10647200	Weak transcription	Fetal Stomach	stomach
28	chr8:10634800-10645800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:10635000-10647000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr8:10635000-10652200	Weak transcription	Liver	Liver
31	chr8:10635400-10664400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr8:10635600-10645600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr8:10635600-10645800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr8:10635600-10646200	Weak transcription	Esophagus	oesophagus
35	chr8:10635600-10646600	Weak transcription	Right Ventricle	heart
36	chr8:10635600-10656800	Weak transcription	Ovary	ovary
37	chr8:10636200-10646400	Weak transcription	Placenta	Placenta
38	chr8:10636400-10646200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr8:10636600-10646200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr8:10636800-10645600	Weak transcription	Brain Substantia Nigra	brain
41	chr8:10636800-10646200	Weak transcription	Brain Hippocampus Middle	brain
42	chr8:10637000-10645800	Weak transcription	Brain Angular Gyrus	brain
43	chr8:10637200-10646000	Weak transcription	HSMMtube	muscle
44	chr8:10637200-10646200	Weak transcription	Brain Anterior Caudate	brain
45	chr8:10639600-10646200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr8:10639800-10645800	Weak transcription	Fetal Muscle Leg	muscle
47	chr8:10639800-10646200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr8:10639800-10648800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr8:10639800-10648800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr8:10639800-10649200	Weak transcription	Stomach Smooth Muscle	stomach

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