Variant report

Variant	rs17152577
Chromosome Location	chr5:124614654-124614655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11740444	0.82[ASN][1000 genomes]
rs13157669	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13162906	0.87[ASN][1000 genomes]
rs13172476	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13177664	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185858	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1347924	0.87[ASN][1000 genomes]
rs1439581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17152511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152519	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152524	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152532	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152545	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152569	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17152579	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408379	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34833831	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34892968	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35073242	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35108894	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35654224	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35802525	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35914668	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36050183	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595603	0.87[ASN][1000 genomes]
rs6892733	0.87[ASN][1000 genomes]
rs73311010	0.82[ASN][1000 genomes]
rs7721989	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124609000-124614800	Enhancers	HUVEC	blood vessel
2	chr5:124611600-124617200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:124611600-124617200	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:124611800-124617200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:124612600-124614800	Enhancers	NH-A	brain
6	chr5:124612800-124616800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:124612800-124617200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:124613400-124614800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:124613600-124617200	Weak transcription	Fetal Heart	heart
10	chr5:124614400-124631400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:124614600-124614800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:124614600-124614800	Enhancers	HSMMtube	muscle

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