Variant report

Variant	rs17152623
Chromosome Location	chr8:10712981-10712982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:10712367..10714043-chr8:10772145..10774622,2	K562	blood:
2	chr8:10582499..10584929-chr8:10712844..10715124,2	K562	blood:
3	chr8:10711587..10713736-chr8:10731150..10732656,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10089869	0.86[CEU][hapmap]
rs10096939	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs10110723	0.80[CEU][hapmap]
rs10503411	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs10503412	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs1078543	1.00[JPT][hapmap]
rs1139843	1.00[CHD][hapmap]
rs11774457	0.80[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11776965	0.94[ASN][1000 genomes]
rs11779094	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11779336	0.90[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11782490	0.89[ASN][1000 genomes]
rs11783803	0.80[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs11787390	0.98[EUR][1000 genomes]
rs12545398	0.85[EUR][1000 genomes]
rs13265197	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13269447	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17152366	1.00[JPT][hapmap]
rs17152410	0.80[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs17152412	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs17152542	0.90[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17721760	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17774023	1.00[JPT][hapmap]
rs2409664	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs28544530	0.89[ASN][1000 genomes]
rs28675255	0.89[ASN][1000 genomes]
rs28706358	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2898245	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3808604	0.88[ASN][1000 genomes]
rs4240668	1.00[JPT][hapmap]
rs4840515	1.00[JPT][hapmap]
rs4840518	0.90[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4841447	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4841448	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4841449	0.80[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4841453	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4841455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57689233	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57868806	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6983956	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6984094	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7003456	1.00[CHD][hapmap]
rs7012879	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7350075	1.00[JPT][hapmap]
rs7350124	1.00[JPT][hapmap]
rs73531553	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73531554	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73533521	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73533523	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7813875	0.81[EUR][1000 genomes]
rs7815184	1.00[CHD][hapmap]
rs7822666	1.00[CHD][hapmap]
rs7836178	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs891560	1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1031726	chr8:10627742-10749369	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv508497	chr8:10680621-10750255	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10708600-10713200	Weak transcription	Brain Angular Gyrus	brain
2	chr8:10708600-10715400	Weak transcription	Right Atrium	heart
3	chr8:10709600-10720400	Weak transcription	Pancreas	Pancrea
4	chr8:10710200-10718200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:10711600-10713600	Enhancers	Fetal Brain Male	brain
6	chr8:10711600-10714800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:10711800-10713600	Enhancers	Fetal Brain Female	brain
8	chr8:10712200-10714400	Enhancers	Brain Anterior Caudate	brain
9	chr8:10712200-10714600	Enhancers	Brain Cingulate Gyrus	brain
10	chr8:10712400-10713600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:10712400-10713600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:10712400-10713600	Flanking Active TSS	NHEK	skin
13	chr8:10712600-10713600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:10712800-10713000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:10712800-10713200	Enhancers	HMEC	breast
16	chr8:10712800-10714400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr8:10712800-10715200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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