Variant report

Variant	rs17152638
Chromosome Location	chr5:124653053-124653054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2068612	1.00[EUR][1000 genomes]
rs57720352	1.00[AMR][1000 genomes]
rs6866932	1.00[EUR][1000 genomes]
rs73321471	1.00[EUR][1000 genomes]
rs73784952	1.00[EUR][1000 genomes]
rs7735157	1.00[AMR][1000 genomes]
rs955183	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124650600-124655200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:124650800-124654400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:124651800-124653400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:124651800-124653600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:124652000-124653800	Enhancers	Fetal Brain Male	brain
7	chr5:124652400-124653200	Weak transcription	A549	lung
8	chr5:124652400-124653400	Enhancers	Fetal Intestine Small	intestine
9	chr5:124652400-124653600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:124652400-124653600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:124652600-124653400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:124652600-124653400	Enhancers	Fetal Intestine Large	intestine
13	chr5:124652600-124653600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:124652600-124653600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:124652600-124654200	Enhancers	Brain Germinal Matrix	brain
16	chr5:124652600-124654400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr5:124652800-124653200	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr5:124652800-124653800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr5:124653000-124653200	Active TSS	Brain Substantia Nigra	brain
20	chr5:124653000-124653400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr5:124653000-124653400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr5:124653000-124653400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:124653000-124653400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr5:124653000-124653400	Active TSS	Brain Hippocampus Middle	brain
25	chr5:124653000-124653400	Enhancers	HSMMtube	muscle
26	chr5:124653000-124653400	Enhancers	NHDF-Ad	bronchial
27	chr5:124653000-124653600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr5:124653000-124653600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr5:124653000-124653600	Flanking Active TSS	Liver	Liver
30	chr5:124653000-124653800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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