Variant report

Variant	rs17160018
Chromosome Location	chr11:72099692-72099693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1160142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12295464	0.88[EUR][1000 genomes]
rs17162130	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17162131	0.85[YRI][hapmap]
rs17162133	0.85[YRI][hapmap]
rs17162135	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17162138	0.85[YRI][hapmap]
rs17162141	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17162150	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs1864322	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2886351	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4268536	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4475949	0.89[ASN][1000 genomes]
rs4488227	0.89[ASN][1000 genomes]
rs57380316	0.95[EUR][1000 genomes]
rs57402767	0.90[EUR][1000 genomes]
rs58058345	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58515298	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58571741	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107422	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7109307	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109466	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7111173	0.81[EUR][1000 genomes]
rs7118089	0.90[EUR][1000 genomes]
rs7118697	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs7120137	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs7129526	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs730042	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73528860	0.87[ASN][1000 genomes]
rs7927430	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938979	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7939212	0.80[EUR][1000 genomes]
rs7940087	0.83[EUR][1000 genomes]
rs7947482	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs7950298	0.82[CEU][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72065000-72110800	Weak transcription	Hela-S3	cervix
2	chr11:72069400-72111400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr11:72073400-72103200	Weak transcription	K562	blood
4	chr11:72090200-72103200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:72090400-72123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:72090800-72105400	Weak transcription	Left Ventricle	heart
7	chr11:72091400-72106600	Weak transcription	Aorta	Aorta
8	chr11:72091400-72106600	Weak transcription	Ovary	ovary
9	chr11:72091400-72109600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:72091400-72111400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:72091600-72119200	Weak transcription	Thymus	Thymus
12	chr11:72093800-72109400	Weak transcription	Pancreas	Pancrea
13	chr11:72095200-72102600	Weak transcription	HepG2	liver
14	chr11:72095200-72103000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:72095200-72103200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:72095200-72112800	Weak transcription	Fetal Stomach	stomach
17	chr11:72095600-72106600	Weak transcription	Fetal Heart	heart
18	chr11:72095800-72110600	Weak transcription	Dnd41	blood
19	chr11:72096200-72100000	Weak transcription	Primary T cells from cord blood	blood
20	chr11:72096200-72108000	Weak transcription	Primary B cells from cord blood	blood
21	chr11:72096200-72110600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:72096400-72105600	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:72096800-72101600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:72096800-72101600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:72098200-72108800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr11:72098400-72101400	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr11:72098600-72100400	Enhancers	HMEC	breast
28	chr11:72098600-72100600	Enhancers	NHEK	skin
29	chr11:72098800-72100000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:72098800-72100200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:72098800-72100600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:72099000-72106600	Weak transcription	Right Ventricle	heart
33	chr11:72099200-72100000	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr11:72099200-72100200	Weak transcription	NH-A	brain
35	chr11:72099200-72102400	Enhancers	GM12878-XiMat	blood
36	chr11:72099200-72103800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:72099200-72105400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr11:72099200-72105400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:72099200-72105600	Weak transcription	Esophagus	oesophagus
40	chr11:72099200-72105600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:72099200-72105800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:72099200-72106800	Weak transcription	Adipose Nuclei	Adipose
43	chr11:72099200-72110600	Weak transcription	HSMM	muscle
44	chr11:72099200-72110800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:72099200-72111200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:72099200-72111400	Weak transcription	HSMMtube	muscle
47	chr11:72099200-72111600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr11:72099200-72111600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:72099200-72112800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:72099200-72112800	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links