Variant report

Variant	rs17160078
Chromosome Location	chr7:112584304-112584305
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112578476..112580812-chr7:112583356..112586040,2	MCF-7	breast:
2	chr7:112583353..112585564-chr7:112597999..112600804,2	MCF-7	breast:
3	chr7:112579376..112581874-chr7:112583714..112588388,6	K562	blood:
4	chr7:112577667..112580375-chr7:112582881..112584475,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164603	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10238492	1.00[JPT][hapmap]
rs10243834	0.83[ASN][1000 genomes]
rs10249952	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10272143	0.83[ASN][1000 genomes]
rs10275208	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10280618	0.87[ASN][1000 genomes]
rs10280825	0.87[ASN][1000 genomes]
rs1044262	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10500014	0.80[ASN][1000 genomes]
rs11762737	0.83[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11768408	0.90[ASN][1000 genomes]
rs11768787	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11769037	0.81[AMR][1000 genomes]
rs1227174	0.82[CHB][hapmap]
rs1227181	0.82[CHB][hapmap]
rs1227190	0.82[CHB][hapmap]
rs1238698	0.82[CHB][hapmap]
rs12535487	0.82[CHB][hapmap]
rs12539085	1.00[CHB][hapmap]
rs1530756	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547554	1.00[CHB][hapmap]
rs1718967	1.00[CHB][hapmap]
rs17405723	0.83[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1796492	0.82[CHB][hapmap]
rs1796493	0.82[CHB][hapmap]
rs1796516	0.82[CHB][hapmap]
rs1976897	0.90[ASN][1000 genomes]
rs1992988	0.91[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1996843	1.00[CHB][hapmap]
rs2396570	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs2396574	1.00[CHB][hapmap]
rs2396583	0.87[ASN][1000 genomes]
rs2457	0.82[CHB][hapmap]
rs2687267	1.00[CHB][hapmap]
rs2708296	0.82[CHB][hapmap]
rs35983930	0.80[ASN][1000 genomes]
rs3957315	1.00[JPT][hapmap]
rs3997335	1.00[CHB][hapmap]
rs494324	1.00[CHB][hapmap]
rs549688	0.82[CHB][hapmap]
rs552304	1.00[CHB][hapmap]
rs56012709	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs564494	1.00[CHB][hapmap]
rs62491096	0.81[ASN][1000 genomes]
rs62491097	0.90[ASN][1000 genomes]
rs62491099	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6466421	0.82[CHB][hapmap]
rs6466423	0.87[ASN][1000 genomes]
rs672911	1.00[CHB][hapmap]
rs685259	1.00[CHB][hapmap]
rs6944843	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6953522	1.00[CHB][hapmap]
rs73196926	0.80[ASN][1000 genomes]
rs7777973	0.82[CHB][hapmap]
rs7781871	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7789589	0.90[ASN][1000 genomes]
rs7803405	0.82[CHB][hapmap]
rs7806781	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7808616	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs821783	1.00[CHB][hapmap]
rs821785	1.00[CHB][hapmap]
rs821787	1.00[CHB][hapmap]
rs9969347	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv1794529	chr7:112400060-112588376	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2754368	chr7:112483049-112588049	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758131	chr7:112492127-112768628	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2759556	chr7:112492127-112768628	Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3692941	chr7:112571420-112614215	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv1795316	chr7:112577657-112588734	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv1027981	chr7:112577657-112613212	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	nsv1020911	chr7:112581515-112615249	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112581000-112585200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr7:112581000-112585200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:112581000-112593800	Weak transcription	Left Ventricle	heart
4	chr7:112581400-112584600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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