Variant report

Variant	rs17165848
Chromosome Location	chr5:97655053-97655054
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11738876	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11745914	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957758	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12513398	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12652566	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12654883	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13355852	0.86[EUR][1000 genomes]
rs1350022	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1378440	0.80[GIH][hapmap]
rs1378444	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455427	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1455429	0.86[EUR][1000 genomes]
rs1455430	0.86[ASN][1000 genomes]
rs17165846	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17165849	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061115	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2198680	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35774032	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4538635	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4559027	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60805392	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62366857	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6876270	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889185	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6898721	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs921815	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97646200-97655200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr5:97646400-97655600	Weak transcription	Brain Substantia Nigra	brain
3	chr5:97651200-97656000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:97651200-97656000	Weak transcription	Brain Anterior Caudate	brain
5	chr5:97653400-97657000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:97653600-97655200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:97654600-97655800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:97654800-97656000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:97654800-97656000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:97655000-97655200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:97655000-97655200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:97655000-97655600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr5:97655000-97655600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr5:97655000-97656000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr5:97655000-97656200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:97655000-97656200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr5:97655000-97656400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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